Papaver somniferum (opium poppy): 113347447
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Entry
113347447 CDS
T05758
Name
(RefSeq) cleavage stimulating factor 64-like isoform X1
KO
K14407
cleavage stimulation factor subunit 2
Organism
psom
Papaver somniferum (opium poppy)
Pathway
psom03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
psom00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
113347447
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
psom03019
]
113347447
Messenger RNA biogenesis [BR:
psom03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage stimulation factor (CSTF) complex
113347447
U7-dependent histone pre-mRNA processing factors
113347447
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GFIT
Motif
Pfam:
RRM_1
CSTF2_hinge
CSTF_C
partial_CstF
RRM_7
RRM_10
Motif
Other DBs
NCBI-GeneID:
113347447
NCBI-ProteinID:
XP_026446888
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Position
2:40980379..40985780
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AA seq
556 aa
AA seq
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MATSNSQHRCVFVGNIPYDATEEQLVQICEEVGPVVSFRLVIDRETGKPKGYGFCEYKDE
ETALSARRNLQGYEINGRQLRVDFAENDKGADRNREQGRGGPGLTPSVDPQKPIGGPAVI
VDSALHQPIGISLAATAASVMAGALGSAQSGAMSQQNGLPGQFGLGSDQLTHYLAKMSRN
QMFEIMSEMKVMATQNKELARQLLLSSPQLPKALFQAQIMLGMVTPQVLQMPNIRQSPGS
LLHPPPLQEGMKDHKLALFPPHSGNKMPPGMQEGHLPSVPQNVLVNNQPSSGTYPQLSMQ
PRFSHPQQTQTGQHLPQTTMSMQPGVLTVPSMRPFSGLPIRPQTQVLETSTALNQQIQQP
PLHLRSVAPANLTHNTYQNATVQDSFLPRPPLSQQNFQPSSSNSMMRPSVPDLANKFAER
SAQVPVDARNSTYLNMSSGPLEQKRRMGDTSDNMNRPSKLARLEDGQVVRSTVNQQTSTI
GGSGPIQAVGIGSSPANRISSTEGMQYPEKQAPQQAPDDESALLEQVMNLTPEQLSSLPL
EQRQQVIQLQKMLANR
NT seq
1671 nt
NT seq
+upstream
nt +downstream
nt
atggctaccagcaattctcagcaccgctgcgtttttgttgggaatataccgtatgatgca
actgaagaacagcttgtacaaatctgtgaagaagttggtcctgttgtatccttcaggtta
gttattgatagagaaaccgggaaacccaaagggtatggtttctgtgagtataaggatgaa
gagactgctttaagtgctcgtcgtaatcttcaagggtatgaaataaatggtcgccagtta
cgagttgattttgctgaaaatgataaaggtgctgacagaaaccgcgagcagggccgtggt
gggccagggttgacgccaagtgttgatcctcaaaagccaataggtggcccagctgtcata
gtcgattcagctcttcatcagccaattgggatctcattagctgctacagctgcatctgtc
atggcaggagctctgggtagtgctcagagtggtgccatgtcccagcagaatggtttgcca
ggtcaatttggtttgggcagcgatcagttgactcattatctagctaaaatgtcacgaaat
cagatgtttgagattatgtctgaaatgaaagtaatggctacccaaaacaaagaattagca
cggcagctattgttatcgagtccacagctcccaaaagctctatttcaggcacagataatg
ttagggatggtgactccacaagtgttgcagatgccaaatatccggcaatcacctggttca
ctcttgcacccgcctccactacaagaaggcatgaaggaccacaagttagcattatttcct
cctcattcggggaataaaatgcctcctgggatgcaagaaggccatttaccttctgttcct
cagaatgtcctggtgaacaatcagccttcttctgggacatatcctcagctatctatgcaa
cctcggttttcacatccacaacaaacacaaacaggtcaacatctaccacaaacaacaatg
tcaatgcagcctggagttttaactgttccttccatgaggccattttctggtttgcctatt
aggccacagactcaagttttggaaacttctactgctttgaatcagcaaattcaacagcct
cctctgcatcttcgttcggttgcaccagcaaatttaacacataatacttaccaaaatgca
acagttcaagattcatttctgccccgccctccgttatcacaacaaaattttcagcctagc
tcatcaaattcaatgatgcgacctagtgtacctgacttagctaacaaatttgctgaaaga
tctgctcaagttccggttgatgccagaaacagcacgtatctaaacatgtcctcgggacca
ttggagcaaaagcgtaggatgggtgacacttctgataatatgaatcggccgtcaaagctg
gcgaggttagaagatgggcaggtagtacgtagtacggtgaatcaacaaacatctacgata
ggcggatcgggtccaatccaagctgttggaattggttcatcgcctgctaacaggatttca
agtactgaagggatgcagtatccagagaagcaagctcctcagcaggcacctgatgatgag
tcagccctactggaacaagtgatgaacctgacgccggagcagttgagttctttgccattg
gagcagaggcaacaagtgattcagctccaaaaaatgcttgcaaacaggtga
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