Papaver somniferum (opium poppy): 113348708
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Entry
113348708 CDS
T05758
Name
(RefSeq) polyadenylation and cleavage factor homolog 4-like
KO
K14400
pre-mRNA cleavage complex 2 protein Pcf11
Organism
psom
Papaver somniferum (opium poppy)
Pathway
psom03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
psom00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
113348708
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
psom03021
]
113348708
03019 Messenger RNA biogenesis [BR:
psom03019
]
113348708
Transcription machinery [BR:
psom03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
113348708
Messenger RNA biogenesis [BR:
psom03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
113348708
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf_PCFS4
CID
zf_UBZ
Pcf11_C
zf-C2H2_4
Motif
Other DBs
NCBI-GeneID:
113348708
NCBI-ProteinID:
XP_026448334
LinkDB
All DBs
Position
2:106661301..106667795
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AA seq
855 aa
AA seq
DB search
MPAELIQKLPSPVVDRFRLLLKEREDELRVSDDEDDYSPLSVDDIVRVYDIVLSDLTFNS
KPIITDLTIIAGEQRDCAEGIAEVICNRIAEAPVDQKLPSLYLLDSIVKNIGSAYVRHFS
SRLHEVFFAAYNQVHPNQHPAMRHLFGTWSAVFPPPVLRRIGAELQLSTPTNHQPTGSLA
LTSSGSMSPRPAHGIHVNPKYLEARRQFEHATADVQRGTGVSSSLQMFGKKPDFSYGDKY
DVGDTEIVNPHVRVGKVGPPGTKSSKFQVQSLSPSNNGFGTDKSPERAAPSHLRFEYAPS
RVSGRDGERNDWWSKHGSDLDDQQRPRALIDAYGNYRGKNTLNVERLEVNNFSSEASTRK
WQNTEEEEYVWEDMSPTLADRRSGESMPFNPTYGSLQTRVPLGRSTVGPPEPDLRRSNWP
NQPLRPVVDDSAITAEDGISVLGPGRGSSSNQVVGGPQAQNVASQIPGPSYSSNLHGQFP
QSFPHINREASGRAGQMSFPPTAPPAGQRLPPFHDGNNIFPKEPGHLQPHMFKPLEAREG
FTSLVPAQMSSHVGAQPLNHGHTPQGHNPLLSLPFLNHNPFSSPPIRNMQNNNSFQSHGG
GTVPPLPPGPPPPSHLRPPSQNIGPGASYAPGNSGYTGLISSLMAQGLISLTTPAPDQGS
VGVEFDLDVLKVRHESAIKALYSDLPRQCTTCGLRFRSQEEHSSHMDWHVTRNRMSRNRK
QQPSRKWFVSTSLWLSGAETLGTDAAPGFQPAETVVERKSEEEMAVPADEDQNTCALCGE
PFGDFYSDETEEWMYKGAVYLNALDGSTAGMDRSLLGPIVHAKCRSGSSAVSNEALGQDR
REMLDDSERKRMRVS
NT seq
2568 nt
NT seq
+upstream
nt +downstream
nt
atgccagcggagctgattcaaaagcttccttctccggttgtggatcggtttaggcttcta
ttgaaagaaagagaagatgagttaagggtttctgatgatgaagatgattattcaccactt
tcagttgatgatatcgttcgagtctatgatattgtattatctgatctcacattcaattcc
aagcctattattacagacttaaccattattgctggagaacagagggattgtgctgaagga
attgctgaggtgatctgcaatcggattgccgaggccccagttgatcagaaactaccttcc
ctgtatcttttggacagtattgttaagaacattggcagtgcatatgtgaggcacttctct
tcccgcctacatgaggtgttttttgcggcatacaaccaagtccaccctaatcagcatcct
gccatgcgccacctcttcggcacttggtctgcagtattccctcctccagtgcttcggcga
attggggcagaactacaactgtcaacccctacaaaccatcaaccaactggctcgcttgca
ctgacttcttcaggatccatgtctcctcgtccagcgcatggtatacatgtgaaccccaaa
tatttggaggcaaggcgtcaatttgaacatgccactgcggatgttcaacgtggaacagga
gtttcttcaagcctacagatgtttggaaagaaacctgatttcagttatggtgacaagtat
gacgttggtgacaccgaaattgtcaacccacatgtcagagttggaaaagttggtccacct
ggaacaaagtcttctaaatttcaagttcagtccttatcgccgtcaaataatggatttgga
acagataagtctcctgaaagagcagctccatctcatcttcgatttgaatatgctcctagc
agagtgagtggaagggatggggagagaaatgattggtggagtaaacatgggtcagactta
gatgatcagcaaagaccaagagctttaattgatgcttatgggaattatagaggtaaaaac
actttaaatgttgaacggctcgaggtaaataactttagcagtgaggcaagtacacgaaag
tggcaaaacactgaagaagaagagtatgtttgggaggatatgagcccaactttagcagat
cgtaggagcggtgagtccatgccatttaatcccacttatgggagtttgcagacaagagtt
cctttaggaagatcaactgttggaccaccggagcctgatcttagaagaagcaactggccc
aaccagcctctgcgacctgtggtggatgattcggctatcaccgctgaggatggcatctca
gtcctggggcctggtcgtggatcatcaagtaaccaagttgttggtggacctcaagctcag
aatgttgcttctcaaattccgggtccttcctattcttcgaatttacacggccagtttcca
caatcttttccacatattaatcgggaagcaagtggtagagcaggtcagatgtcttttcca
ccaacagctccaccagctggtcagagattaccaccttttcatgatggtaacaacattttc
ccaaaagaacccggtcatttacagccacacatgtttaaacctcttgaggctcgagaaggt
tttacctctttggttccagcccagatgtcatctcatgttggggcacagccactgaatcat
ggacatactccacaaggccacaaccctcttttgagtttaccttttctaaatcacaatccc
ttttcatctccaccaattcgtaacatgcaaaataataattctttccagtcacatggtggg
ggaacggtaccacctttacctccgggtcctcctcctccatcacatctccgcccgccttca
caaaatataggtcctggagcatcatacgcaccggggaattcgggctatactggtctgata
agctctcttatggcacaggggttgatttcactgactacaccagctccagatcagggttct
gttggagttgagtttgatctggacgttctgaaggttagacatgaatctgcaataaaagca
ctttatagtgatcttccaagacaatgtacaacatgtggattacgctttagaagtcaagag
gagcacagtagtcatatggattggcatgtgacaagaaatcgaatgtccaggaaccgtaag
caacaaccttcgcgcaagtggtttgtgagtactagtttatggctcagtggtgcagagaca
ttaggaaccgatgctgccccagggttccagcccgctgaaactgttgtagagagaaagagt
gaagaagaaatggctgtccctgctgatgaggatcagaatacatgtgcattatgtggagag
ccttttggtgatttttatagtgatgaaactgaggagtggatgtataaaggtgcagtctat
ttaaatgcccttgacggatcaacagcgggtatggataggtctcttttaggtcctatagtt
catgccaagtgcaggtctggatcttctgcagtttcgaatgaagctttaggacaagacaga
agggaaatgctggatgatagtgaaagaaaaaggatgcgagttagttaa
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