Papaver somniferum (opium poppy): 113349249
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Entry
113349249 CDS
T05758
Name
(RefSeq) sm-like protein LSM5
KO
K12624
U6 snRNA-associated Sm-like protein LSm5
Organism
psom
Papaver somniferum (opium poppy)
Pathway
psom03018
RNA degradation
psom03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
psom00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
113349249
09123 Folding, sorting and degradation
03018 RNA degradation
113349249
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
psom03019
]
113349249
03041 Spliceosome [BR:
psom03041
]
113349249
Messenger RNA biogenesis [BR:
psom03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
113349249
mRNA degradation factors
5'-3' decay
Lsm complex
113349249
Spliceosome [BR:
psom03041
]
Complex B
U4/U6.U5 tri-snRNP components
LSm proteins
113349249
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LSM
DUF7452
Motif
Other DBs
NCBI-GeneID:
113349249
NCBI-ProteinID:
XP_026448967
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Position
2:138369379..138373160
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AA seq
87 aa
AA seq
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MSSNPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLRGFDVYVNMVLEDVTEYEITAEGR
RVTKLDQILLNGNNIAILVPGGSPDPE
NT seq
264 nt
NT seq
+upstream
nt +downstream
nt
atgtcaagcaatccatcacagctactcccatcggagttgattgatcggtgcataggatca
aagatatgggtaataatgaagggtgacaaggagttggttggaacccttcggggatttgat
gtttatgtaaacatggtccttgaagacgtcactgaatatgaaataactgccgaaggacga
cgagttacgaagcttgaccaaatactgcttaatggaaacaatattgccattctggtcccc
ggtggctcccctgatccagagtaa
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