Papaver somniferum (opium poppy): 113350122
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Entry
113350122 CDS
T05758
Name
(RefSeq) general transcription and DNA repair factor IIH helicase subunit XPD-like
KO
K10844
DNA excision repair protein ERCC-2 [EC:
5.6.2.3
]
Organism
psom
Papaver somniferum (opium poppy)
Pathway
psom03022
Basal transcription factors
psom03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
psom00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
113350122
09124 Replication and repair
03420 Nucleotide excision repair
113350122
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
psom03021
]
113350122
03036 Chromosome and associated proteins [BR:
psom03036
]
113350122
03400 DNA repair and recombination proteins [BR:
psom03400
]
113350122
Enzymes [BR:
psom01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
113350122
Transcription machinery [BR:
psom03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
113350122
Chromosome and associated proteins [BR:
psom03036
]
Eukaryotic type
Centrosome formation proteins
Spindle formation proteins
113350122
DNA repair and recombination proteins [BR:
psom03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
113350122
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD_2
Helicase_C_2
HBB
ResIII
DEAD
AAA_11
SNF2-rel_dom
NAMPT_N
AAA_19
Motif
Other DBs
NCBI-GeneID:
113350122
NCBI-ProteinID:
XP_026449987
LinkDB
All DBs
Position
2:195548596..195553543
Genome browser
AA seq
756 aa
AA seq
DB search
MKFQIEDITVYFPYDNIYPEQYSYMVELKRTLDAKGHCLLEMPTGTGKTIALLSLITSYS
LSKQSNQLKLLYCTRTVHEMEKTLAELRVLHEYQLKLLGPNARMLALGLSSRKNLCINPT
VNASNSRDSVDAACRKLTASWVREAAVKSPGIPTCDFFENYERAGSNAILPSGVYTLQDL
RTFGKEKGWCPYYLARHMVQFANVVVYSYQYLLDPKVAGFISKEMQRECVVVFDEAHNID
NVCIEALSVSVRQQTLEGATRNLSKMSHEIDRFKATDANRLRAEYNRLVEGLAQRGNLAL
TDAWLANPALPDDILKEAVPGNIRKAEHFLNVLRRLVQYLRGRLQSENVVKEGPVAFVAS
IYAQTGIDQKMLRFCYDRLHSLMMTLEITDTDEFLHIQTICDFATLVGTYTRGFSIIIEP
FDERMPHIPDPVLQLSCHDASLAIKPVFDRFQSVVITSGTLSPIDLYPRLLNFNPVISRS
FTMSMTRDCICPMVLTRGSDQLPVSTKFDMRSDPGVVRNYGRLLLEMVAAVPDGVVCFFV
SYSYMDGIVNSWNEMGILQDIMQHKLVFIETQDVVETTLALDNYRRACDCGRGAVFFSVA
RGKVAEGIDFDRHYGRLVIMFGVPFQYTLSRILLARLEYLRETFQIKEGDFLTFDALRQA
AQCVGRVIRSKADYGMMIFADKRYSRHDKRSKLPGWILSHLREAHLNLSTDMALHIAREF
LRKMAQPYDKTGGEGKKTLLSEEDLKKMVQSNSNMF
NT seq
2271 nt
NT seq
+upstream
nt +downstream
nt
atgaagtttcaaatcgaagatataacagtatatttcccctacgataacatctacccagaa
cagtattcttacatggtagaacttaaaagaaccctagatgcaaaaggacattgtctatta
gaaatgccaacaggtaccggtaaaaccattgctttactctctttaatcactagttattcg
ttatcaaaacaatcaaaccaactaaaactactgtattgtacaagaacagttcatgaaatg
gagaaaaccctagctgaattacgtgttttacatgaatatcaattgaaacttcttggtcca
aacgcaaggatgttagccttagggttaagttccaggaagaatttatgtattaatccgacg
gtgaatgcgagtaattcgagggattcagttgatgctgcgtgtaggaaattgactgcaagt
tgggtaagggaggcagccgtgaagagtcctggtattccgacttgtgatttttttgagaat
tatgagagggctggttcgaatgctattctaccatcgggagtttatacgttgcaagatttg
agaacgtttgggaaggagaaaggttggtgtccttattatttggcaagacatatggtgcaa
ttcgctaatgtggttgtttatagttatcaatatttgctcgatccaaaagtggctggattc
atatcaaaagagatgcaaagggaatgtgttgttgtgtttgatgaagcgcataatattgat
aatgtgtgcattgaagcacttagtgtgagtgtaaggcagcagacactcgaaggtgctact
aggaatcttagcaagatgtctcacgaaattgacaggttcaaggcaaccgatgccaataga
ttacgcgcagagtacaacagactcgtggaaggattagcacagagggggaacctagctctc
acagatgcctggctcgcaaatcctgctttgccggatgatatattgaaggaggccgtacca
ggaaacattcgaaaagcagaacattttctgaatgtattgcgaagattggtacagtatttg
cgggggcgtttgcagagtgaaaatgtcgtaaaagagggacctgttgcgtttgttgcttca
atctatgctcagactggaattgaccagaaaatgctgcggttttgttatgatcggctacac
tctctgatgatgactctagaaatcaccgatacagatgaatttttacatatccaaacaata
tgtgattttgctacacttgtggggacttacacccggggcttttcaattataattgaaccc
ttcgatgagcgaatgccacatatacctgatcccgtattgcagcttagctgtcatgacgct
tcgcttgccataaaacctgtatttgatcggtttcaatcagttgtaataacatctggaact
ctgagtcctattgatctctaccctcgtcttctgaatttcaatccagtcatcagtcgaagc
tttacaatgtctatgacaagagattgcatttgtccgatggttcttactcgtgggagtgac
cagcttccagtaagtacaaagttcgacatgaggagtgatccaggtgttgtcaggaattat
ggacgactcttgctggagatggtggctgctgttccagatggagtcgtttgtttttttgtt
agttattcgtatatggatggcatcgtcaatagttggaatgagatgggaatcttacaggat
ataatgcagcataagcttgtcttcattgagactcaggatgttgtggaaactacattggct
cttgataactatcgaagggcttgtgactgcgggagaggtgctgtttttttttctgttgcc
aggggaaaagtagcggaaggtatagacttcgatcgacattatgggaggcttgtaatcatg
tttggggtaccttttcagtacacgctgagcagaatattgcttgcgcgcttagagtatttg
cgggaaacattccagataaaagaaggagattttttgacttttgacgccttgaggcaagca
gctcagtgtgttggtcgagtcattcgttcaaaagcagattatggcatgatgatttttgct
gacaaaaggtatagccgacatgacaagcggtctaagttacctgggtggatactgtcacat
ttacgagaagcacacctcaacttgagcaccgacatggcattgcatattgcaagagagttc
ctaaggaagatggcacaaccatatgataagactggtggtgaaggcaaaaagaccctgttg
tcagaagaggacttgaagaagatggtgcagagcaactctaacatgttttaa
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integrated database retrieval system
