Papaver somniferum (opium poppy): 113350385
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Entry
113350385 CDS
T05758
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH6-like
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
psom
Papaver somniferum (opium poppy)
Pathway
psom03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
psom00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
113350385
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
psom03019
]
113350385
03012 Translation factors [BR:
psom03012
]
113350385
Enzymes [BR:
psom01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
113350385
Messenger RNA biogenesis [BR:
psom03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
113350385
Translation factors [BR:
psom03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
113350385
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Helicase_C
DEAD
HA2_C
R3H
OB_NTP_bind
Ank_2
nSTAND3
HA2_N
AAA_19
Ank_5
ATPase
ResIII
AAA_16
AAA_22
PhoH
Myosin_head
ABC_tran
FtsK_SpoIIIE
AAA_7
AAA_23
Motif
Other DBs
NCBI-GeneID:
113350385
NCBI-ProteinID:
XP_026450294
LinkDB
All DBs
Position
2:complement(209592824..209600534)
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AA seq
1216 aa
AA seq
DB search
MSGRRKKFSNCKIPNINEATRIRITQALEDFTNSDDSPVLTFDAGMTNFERAEVHKLCRK
YGLKSKSSGVAETRQVSVYKPTGGKDGMFRKKGKKNINLEFSDESKAYLRDLFSRYPPKE
DELNSVQPKKHNAIADNRFRKNDDSLCRPCMDKAKFEEKVKAAFELKNHPKHKQIQEARS
KLPIAVFQDSIMSTVESNQVVLISGETGCGKTTQVPQYLLDYMWGKGEQCKILCTQPRRI
SAISVAERISWERGENVGETAGYKIRMETKGGKNSSVMFCTNGILLRVLVERGNGTGAKD
ENWKSRVSEFTHIVVDEIHERDHHSDFILTILRDLLPSCPNLRLILMSATLDAERFSQYF
GGCPVVRVPGFTYPVRTFYLEDVLSIIKPVEGNHLDPGSTAGGMRDSEVREDHKAALDEA
IDLAWSSDEFDPLLELLLSTEATPRVYNYQHTLTGASPLMVFAGKGRTSDVCTLLSFGVD
CNLRAKDGTTALEWAERANQVEVAEIIKQHMSNVLAKSAEEQELLEKYYSSINPDFVDIV
LVQRLLKKICSDSEEGAILVFVPGWDDINKIRADLLSSPFFKDSSKFIILSLHSMIPSSE
QKKVFQHPPKGSRKIILSTNIAETAITIDDVVYVIDSGRMKEKNYDPYNNVSTLQSSWVS
KASARQREGRAGRCRPGICYHLYSSTRASSLIEFQVPEIKRMPIEELCLKVKMIDPNCSI
ADFLQKTLDPPVYESVRNAIVALQQIGALTADENLTDLGQKFGSLPVHPTTSRMLFFAIL
MSCLDPALTLACATEYRDPFVLPIDPFEKQKALEAKAKFSSLYGGVSDHLMTVAAYECWE
HARNMGQERQFCSQYYISSNTMNMLSNLRKQLIKELIQNGFISEDISIYSQNAREPGVLH
AVLVAAMYPMVGKLIRQTRGGTKTRAVTASGNNFSLLTHPYNIKSLNKQKSQILLVYDDI
TRGDRGMYVRDCTVVGPYPLLLLGTEMVVAPSTADSYEDDEDSSEEEDNSGASGSDEETN
VRVAQKRAERIMASPENAVSVVIDRWLTFESTAIDVAQIYCLRERLKAAILFKVKYPQKD
LPPDLKTSVDAIASILSHDGLTGIPEALRGPIKSSNPEEGQPDDSSSSSDNYLKFLWNYS
IDSHNQSQLFQGGDSGGRGRHGFFANSRGRGRRGGSFTNGRGRGRQGFVANNKFALKRHG
GGGGGAAADGGARQEK
NT seq
3651 nt
NT seq
+upstream
nt +downstream
nt
atgtctgggcggaggaagaagtttagtaattgtaaaatccctaatatcaatgaagctaca
cgtattcgtatcactcaagctcttgaagatttcactaactctgatgattctccagtactt
acattcgatgctggtatgacgaatttcgaaagggcggaagttcataaattatgtaggaaa
tatgggttaaaatctaaaagttcaggggttgcggaaactcggcaagtatcggtgtataaa
ccgacgggtgggaaggatggaatgtttaggaagaagggaaagaaaaacattaacttggaa
ttttcggatgagtcgaaagcttatttaagggatttgttttcaagatatcctcctaaagaa
gatgaattgaactctgttcaacctaagaagcataatgcaattgctgataatagatttagg
aagaatgacgattctttgtgtagaccgtgtatggataaagctaaatttgaagagaaggtg
aaagcagcttttgaattgaaaaaccatccgaaacataagcagatacaggaagcgaggtct
aaacttccaattgcggttttccaggatagcattatgtctactgtagagtctaaccaggta
gtgctcatatccggtgagacagggtgcggaaaaaccacacaggtcccgcaatatttattg
gactacatgtggggtaagggcgagcagtgtaaaattctgtgtactcaacctcgacgtata
tcagccatatcagttgctgagagaatctcttgggaaagaggagaaaatgtaggggagact
gctggttacaagatacggatggagactaaaggagggaagaattcatctgttatgttttgc
acaaacggcattcttttgagggtgctggttgagagaggtaacggtaccggagctaaggat
gaaaattggaagagtagggtttccgaatttactcacattgttgtggatgaaatacatgaa
agggatcaccattctgattttattctgacgattctaagagacttgctcccttcttgtcct
aacttgcgcctgatacttatgagtgcaacccttgatgctgagcggttttcacagtatttt
ggtggctgcccagtcgtccgagtacctggttttacatatccagtcagaactttctatttg
gaggatgttctttctataataaaaccagtggaggggaatcatcttgatcctggttcaaca
gctggaggcatgcgagattctgaggtacgagaggatcataaagctgcacttgatgaagca
attgatttggcatggtctagtgatgagtttgatcctctcctagaactactgctttctact
gaggctactccgagagtgtataattatcaacacactttgactggagcctcaccattaatg
gtttttgctgggaaaggtagaactagtgatgtttgcacgctcctctcatttggtgtggat
tgcaatctacgcgccaaagatggaactacagctttggaatgggccgagagggcaaaccag
gttgaagttgctgaaataatcaagcaacatatgagtaatgtccttgcaaaatcagcagaa
gaacaggagttgcttgagaagtattattccagtatcaatccagattttgtcgacattgtt
cttgtgcagcgtttgttaaagaaaatttgttctgattctgaagaaggtgctatccttgta
tttgttccaggatgggatgatatcaataaaattcgagccgacttactttcttctccattt
ttcaaggatagttctaaatttataatattatcacttcactctatgattccatcttctgaa
cagaagaaggttttccagcatccacctaaaggttcacgcaagattattctctcgaccaac
attgctgagactgctattacaattgacgatgtagtttatgttatagacagtggcaggatg
aaagagaaaaattatgatccttacaataatgtttctacactccagtcctcgtgggtttcg
aaggctagtgccaggcagcgggaagggcgtgctgggcgttgccgtccaggtatttgttac
catctctactcaagtactcgagcctcatctttgatagagttccaagttccagaaatcaaa
cggatgccaattgaggagctctgtttgaaggtgaagatgatcgatccaaattgcagtata
gcagacttcttacagaagactttggaccctccagtttatgagagcgtacgcaatgcaatt
gtggctcttcaacaaattggagccttgacagctgatgaaaatctaaccgaccttgggcaa
aaattcggttctctgccagtgcatccaacaacgagcaggatgctgttctttgccatattg
atgagctgccttgatccagctctgactctggcatgtgcgactgaatacagggatccattt
gttctgccaatagacccttttgaaaagcagaaagcgttggaagctaaagcaaagttttca
tctttatatggcggggtaagtgatcacctgatgaccgttgcagcctatgagtgttgggaa
catgcaagaaacatgggtcaagaacgtcaattctgttctcagtattatatctcctcaaac
accatgaatatgctgtctaacttgcgtaagcagcttatcaaggagctgatacagaatggg
tttatttcagaggatatatctatatatagccagaatgcgcgtgagccaggtgtactccat
gcagttcttgtggcagcgatgtatcctatggttggaaaactaatccgacaaactagaggt
ggaactaaaactagggcggtaactgcaagtggtaataacttttcattgctcactcatcct
tataatatcaaatcactcaacaagcagaagtctcaaatactgctcgtatatgatgatatt
acccgtggtgatcgaggtatgtatgtaagggactgtactgttgtgggtccatacccattg
ttgttacttggaacagagatggttgttgcaccttcaacagctgatagttacgaagatgat
gaggatagtagtgaagaagaagacaacagtggcgcatctggaagtgatgaggagacgaac
gttagagttgcacaaaaacgtgctgagcggatcatggcctcccctgaaaatgctgtctct
gttgttattgaccgttggcttacttttgagtccacagcaattgatgttgctcagatttac
tgcttgagggagcgattgaaggcagcaatcctttttaaagtcaaatacccacaaaaagat
cttcctccagatctcaagacatctgttgatgcaatagcttccatcctttctcatgacggc
ttaacagggattcctgaagccttgagaggtcccattaagtcgtctaatccagaggaaggt
caaccagacgatagcagcagttcctcagacaattatctgaaatttctgtggaactatagt
attgattcccacaatcaaagccagttatttcaaggtggtgatagtggtggacgaggtaga
catggtttcttcgcaaatagtcgtggacgaggtagaaggggtggttcctttactaatggt
cgtggacgcggtagacagggtttcgttgctaataataaatttgctcttaaacgacatggt
ggtggtggtggtggtgctgctgctgatggcggggctcgtcaagaaaaatga
DBGET
integrated database retrieval system
