Papaver somniferum (opium poppy): 113350843
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Entry
113350843 CDS
T05758
Name
(RefSeq) carbon catabolite repressor protein 4 homolog 2-like
KO
K12603
CCR4-NOT transcription complex subunit 6 [EC:
3.1.13.4
]
Organism
psom
Papaver somniferum (opium poppy)
Pathway
psom03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
psom00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
113350843
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
psom03019
]
113350843
Enzymes [BR:
psom01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.4 poly(A)-specific ribonuclease
113350843
Messenger RNA biogenesis [BR:
psom03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
113350843
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
113350843
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Exo_endo_phos
PDE12-like_N
DUF1997
Motif
Other DBs
NCBI-GeneID:
113350843
NCBI-ProteinID:
XP_026450736
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Position
2:35263876..35267573
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AA seq
543 aa
AA seq
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MLLELNPETPVVGCEIILIGSVHSKAGYVIPDDSLDYNWYRLQNEERLICWEHPSQIATF
QCRACAVSGKHVKETFHCTVKCYNDHWLNHHKSHPKVAASLQMITEVENHGYDCTCSSCS
AFDVSPAFDMDLLVNNNAKAVHRSWVKVGISKTYTPTIADFGYRLKLEVVPTVFCAGIPW
VPAELQTNHVIVAPPPRYMIPVKPLDCFSNFNLESQICADRPFSVLSYNVLADISFVSRR
FKVIILKTSLSPSFKGLATHLYISEKRRGCLLIKESTHDGCATFFRFDKFRQVEKYELEF
NTIAQELAESLDEDQRHSMMKNNVALITILETIETEPLCDTSIRRICVANVHVSANPQFM
DVKLWQVGTLIEGLERIVAHSYVPVLIYGDLNSLPRSAAHNLLVNGKVNPMHEDLVKTPY
EIFQHLKLSHELPPLASAYSSFSRATNGDSKQWSMMNPNTQEPRFTIARPNFRSAIDYIF
YTEDMLTVRSLLELVHLRSAIRDTAFPSAMWPSDHIALMAEFSWKTPRQNQLVNSRDITY
SSV
NT seq
1632 nt
NT seq
+upstream
nt +downstream
nt
atgctattggaactaaatcctgaaactccagttgttggttgcgaaatcattcttattggt
tctgttcattctaaagcaggttatgttattccagacgactcattggattacaactggtat
aggctgcaaaacgaagagagactcatttgctgggaacaccctagtcaaatagctactttc
cagtgcagagcttgtgcagtatcaggcaaacatgttaaggagactttccactgcactgtg
aagtgttacaatgatcattggctgaaccaccacaaaagtcatcctaaagtagcagcctcg
ttacagatgattacagaagttgagaatcatgggtatgactgtacttgctcctcgtgttcg
gcttttgatgtgtcccctgcttttgatatggatttactagttaataataatgcaaaagca
gtacataggtcatgggttaaagtgggtatttcaaaaacctatacacccacaatagcggat
tttggatatagattaaaactggaagttgttccaacagtcttttgtgcaggaatcccttgg
gtcccagccgaattacagactaatcatgtaatcgttgcacctccgcctcgctatatgatt
ccagttaaacctttggattgttttagtaactttaatttggaatcacaaatatgtgctgat
aggccttttagtgtgctctcgtacaatgtccttgctgacatatcatttgtctccaggagg
ttcaaagtgatcattttgaagacttctttaagcccgagcttcaaaggtttggctactcat
ctgtatataagcgaaaaacgaaggggttgtttacttataaaagagagtacacatgatggg
tgtgccacgttttttcgctttgataaattcagacaagttgagaaatatgagctcgagttt
aatactattgcacaagaactagccgagtcacttgatgaagatcagagacatagcatgatg
aagaataatgttgcacttataacaatattggagacaatcgaaactgaaccactttgtgac
acatcaattcgtagaatttgtgtggcaaatgttcatgtatctgccaacccacaatttatg
gatgtaaaactatggcaggttggaacccttattgaaggtctggagcgaattgtagctcat
tcgtatgttccggttctcatttatggggatcttaactctcttccaagaagtgctgctcat
aatcttctagttaatggtaaggtgaatcctatgcatgaggatttggtgaagactccttat
gaaatatttcaacatctcaagctttctcatgaactgccacctctggcgagtgcatattca
tccttctcaagagcgacgaatggggattctaaacaatggagtatgatgaatccaaataca
caggagcctcgattcactattgctagacccaatttccgttctgcaatagattatattttt
tacacagaggatatgttgacagtgagaagtctactagaattggttcatctgaggtctgca
attagggatacagcttttccatcagcaatgtggccgtcggatcacattgccctcatggct
gaattctcatggaagactccacgccaaaatcaacttgtgaatagtcgtgatataacgtac
agttctgtataa
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