Papaver somniferum (opium poppy): 113353334
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Entry
113353334 CDS
T05758
Name
(RefSeq) pre-mRNA cleavage factor Im 25 kDa subunit 1-like
KO
K14397
cleavage and polyadenylation specificity factor subunit 5
Organism
psom
Papaver somniferum (opium poppy)
Pathway
psom03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
psom00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
113353334
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
psom03019
]
113353334
Messenger RNA biogenesis [BR:
psom03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor Im (CFIm)
113353334
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Gene cluster
GFIT
Motif
Pfam:
NUDIX_2
Motif
Other DBs
NCBI-GeneID:
113353334
NCBI-ProteinID:
XP_026452760
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Position
2:complement(56494697..56496558)
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AA seq
209 aa
AA seq
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MDDQIVDEDDTNSCVVNIYPLRGNYFGSKDAILPKHHIYFDQLQKLKSIYSTNGMRVCVE
AVMLVELFKQPHLLVLQMRNSFFKLPGGRLRLGESEIEGLKRKLSNKLSVNGNGVDDNWE
VGECLGTWWRSDFETSLCPFLPPHMKSPKECLKLFLVRFPMNKSFVVPKNQKLLVLPLFQ
VHDNFKTYGQIVSEVPSFLSRFSFNMNNV
NT seq
630 nt
NT seq
+upstream
nt +downstream
nt
atggatgatcaaatagtcgatgaggatgacactaatagctgtgtggtgaacatttatcca
ttaaggggtaactactttggatcaaaagatgctattcttcctaaacaccatatctacttt
gatcaattacagaaattgaaatccatttattcaacaaatgggatgagggtttgtgtggaa
gcagttatgttggttgaattgtttaaacaacctcatttgctagtgttgcaaatgagaaat
tctttctttaagcttcctggtggtcgattaagactcggtgaatcagagatcgaaggacta
aagcgcaaactctcaaacaagctatcagtaaatggaaacggagttgatgacaattgggag
gtaggagagtgtcttggaacatggtggagatctgactttgaaacttccttatgcccattt
ttgcctcctcacatgaagagccccaaagaatgcttaaagctctttcttgtgagatttcca
atgaacaagagtttcgttgttccaaaaaatcaaaagcttctggtattgccacttttccaa
gttcatgacaattttaagacctacggccagattgtttcggaagttccaagtttcctatca
agattttccttcaacatgaataatgtttga
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