Papaver somniferum (opium poppy): 113355738
Help
Entry
113355738 CDS
T05758
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 37-like
KO
K11594
ATP-dependent RNA helicase DDX3X [EC:
5.6.2.7
]
Organism
psom
Papaver somniferum (opium poppy)
Brite
KEGG Orthology (KO) [BR:
psom00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
psom03019
]
113355738
03041 Spliceosome [BR:
psom03041
]
113355738
03036 Chromosome and associated proteins [BR:
psom03036
]
113355738
Enzymes [BR:
psom01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
113355738
Messenger RNA biogenesis [BR:
psom03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
113355738
mRNA cycle factors
Common to processing body (P body) and stress granule
113355738
Spliceosome [BR:
psom03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
113355738
Chromosome and associated proteins [BR:
psom03036
]
Eukaryotic type
Gene silencing
RISC (RNA-induced silencing complex)
113355738
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Motif
Other DBs
NCBI-GeneID:
113355738
NCBI-ProteinID:
XP_026454461
LinkDB
All DBs
Position
3:31346236..31351369
Genome browser
AA seq
641 aa
AA seq
DB search
MSWADAVTDNTAGGGGGSRPTRPSYVPPHLRGLNPLAQEFPPIQSANDSSGGSSLNRSRS
REFVRPRGGGSGGGGGRWGGGGGGRRSYEPNPFDVADKFAELGVTEIEGGEEGNVGLGGI
NFDAYEDIPVETSGTDVPQQVNTFAEIDLGEALNQNIMRCKYVKPTPVQRHAIPIVAAGR
DLMACAQTGSGKTAAFCFPIISGIMKRLQMQQNIPGRGNGRVAYPYALIISPTRELSCQI
HDEAKKFSYQTGVKVAVAYGGAPMHQQLRNLERGVDILVATPGRLVDLIERARVSLSMIS
YLALDEADRMLDMGFEPQIRKIVQQMDMPPPGERQTMLFSATFPAEIQRLASDFLSNYIF
LTVGRVGSSTELIEQRVEYVLDPDKRSFLMDLLHTQRENGTYGKQALTLVFVETKRGADA
LEHWLTINGFPATAIHGDKVQMEREQALRSFKTGATPIMVATDVAARGLDIPHVAHVINF
DLPKDIDDYVHRIGRTGRAGKSGIATAFFNEGNQGISKSLLELLQEGNQAVPTWLNQYAE
RASYGGGGGRGRRQGGGRFGAQDYRNQPSRGGSNYYGGGGGYGGGGSGYGGGGGYGGGGY
GNDAYGGGSGASSGYYAAAPAPSYGGYSYGQQESIVPSGWD
NT seq
1926 nt
NT seq
+upstream
nt +downstream
nt
atgtcttgggctgatgctgttactgataacactgctggaggtggtggtggttctagacct
actagaccatcatatgttccacctcatttgagagggcttaacccattagcacaagagttt
ccacctattcaatcagctaatgattcatctggggggtcttcgttgaatcggtctaggagt
agagagtttgttagacctagaggtggtggtagtggaggaggaggaggtagatggggtggt
ggtggtggtgggagaaggagctatgagccaaacccatttgatgttgctgataaatttgct
gaattaggtgttactgaaattgaaggaggagaggagggtaatgttggtcttgggggtatt
aattttgatgcttatgaggatattcctgttgagactagtggaactgatgtgccgcagcag
gtgaatacgtttgcggagattgatttaggggaagctttgaatcagaatattatgagatgc
aaatatgtgaagcccacacctgttcaacgccacgcaattccgattgttgctgctggaagg
gatttaatggcttgtgcacaaactggctctggaaaaactgcagcattttgttttcctatt
atcagtgggattatgaagaggcttcaaatgcagcagaatattcccggtcgtggtaatgga
agagttgcttatccttatgctcttattatttctcctactagagagttgtcttgccagata
catgatgaagcgaaaaagttctcttatcagaccggtgttaaagtcgctgttgcatatggt
ggagcaccgatgcatcagcagctgcgtaatttggaaagaggtgttgacattcttgttgca
actcctggtcgcttggtggatttgattgaaagagctagagtatctcttagcatgataagc
tatctggcgttggatgaggctgacaggatgctggatatgggctttgagcctcagataagg
aagatagttcagcagatggacatgcctccccctggtgagcggcagacaatgctcttcagt
gccacttttccagctgagatacagaggctggcttctgattttctttcgaactatattttc
ctaactgttggaagggttgggtctagcactgaactaattgaacagagggttgaatatgtt
cttgatccggacaaaagaagcttcttgatggatcttcttcatactcaaagagagaatggc
acttacggaaagcaagcgttgactttagtttttgtggagacaaagagaggagctgatgca
ttggagcattggctgacaataaatggttttcctgcaacagcaatacatggggataaagtt
caaatggagcgtgaacaagctttgagatcattcaagactggtgcaacgcctattatggta
gcaacagatgttgctgcgcgagggcttgacataccacatgttgcacatgtcatcaatttt
gacctgccaaaagacatagatgattatgttcatcgaatagggcgtactggtcgtgctggc
aagtcaggcattgcaacagctttcttcaatgaaggcaaccagggcatctccaaatcactt
ttagaactcctgcaggaaggaaaccaggcggttcccacttggctcaatcagtatgctgaa
agggcctcctatggtggcggtggtggcaggggccgtcgacagggtggcggtaggtttggt
gcccaggattaccgaaatcaaccttccagaggtggaagtaattactatggtggcggaggt
ggatatggtggaggtggaagtggatacggtggcggaggtggatatggtggtggtggatat
ggaaatgatgcatatggtggtggatctggtgctagctctggttattatgctgctgcacct
gcaccttcctatggtggttatagttacgggcagcaggaatctattgtcccaagcggttgg
gattaa
DBGET
integrated database retrieval system
