Papaver somniferum (opium poppy): 113355783
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Entry
113355783 CDS
T05758
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 56-like
KO
K12812
ATP-dependent RNA helicase UAP56/SUB2 [EC:
5.6.2.7
]
Organism
psom
Papaver somniferum (opium poppy)
Pathway
psom03013
Nucleocytoplasmic transport
psom03015
mRNA surveillance pathway
psom03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
psom00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
113355783
09122 Translation
03013 Nucleocytoplasmic transport
113355783
03015 mRNA surveillance pathway
113355783
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
psom03019
]
113355783
03041 Spliceosome [BR:
psom03041
]
113355783
Enzymes [BR:
psom01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
113355783
Messenger RNA biogenesis [BR:
psom03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
113355783
Spliceosome [BR:
psom03041
]
Complex C
Other components
EJC/TREX
113355783
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
113355783
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
CMS1
YihI
Motif
Other DBs
NCBI-GeneID:
113355783
NCBI-ProteinID:
XP_026454514
LinkDB
All DBs
Position
3:complement(33151983..33156771)
Genome browser
AA seq
427 aa
AA seq
DB search
MGEVKDTEYEEELLDYEEDEEKAPDSIGAKTNGETVKKGYVGIHSSGFRDFLLKPELLRA
IVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQIEPVAGQVAALVL
CHTRELAYQICHEFERFSTYLTDIKVAVFYGGVHIKSHKDLLKNECPHIVVGTPGRILAL
ARDKDLALKNVRHFILDECDKMLESLDMRKDVQEIFKMTPHDKQVMMFSATLSKEIRPVC
KKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSELEKNRKLNDLLDALDFNQVVIFVKSVSR
AAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGHKRILVATDLVGRGIDIERVNIV
INYDMPDSADTYLHRVGRAGRFGTKGLAITFVASASDSDVLNQVQERFEVDIKELPEQID
TSTYMPS
NT seq
1284 nt
NT seq
+upstream
nt +downstream
nt
atgggagaagttaaagacactgagtatgaggaggaacttctcgattacgaagaagacgaa
gaaaaagcaccagattctatcggtgctaagactaatggagaaaccgtcaagaagggatac
gttggaattcacagctctggatttagagattttcttttaaagccggaactacttagagct
attgttgattctggatttgaacatccttctgaagtgcaacatgagtgtatccctcaagct
attttgggaatggatgttatttgccaagccaaatctgggatgggaaagactgccgttttt
gttttatctacacttcagcaaattgagcctgttgcaggacaagtggctgcacttgttttg
tgccatacaagagagttagcttaccagatctgtcacgagtttgagaggttcagtacatac
ttaactgacatcaaggttgctgtcttttatggtggggttcacatcaaaagccataaggat
ttacttaaaaatgagtgtcctcatattgtcgttggaactcctgggaggatactagcattg
gcaagagacaaggaccttgctttgaagaatgtgagacacttcatccttgatgaatgtgac
aagatgctggaatcgcttgacatgcgaaaggatgtgcaggagatatttaagatgacacct
catgataagcaagtaatgatgttttcagcaactctcagcaaagagattcgccctgtttgc
aagaaatttatgcaagatccaatggaaatctatgtggatgatgaggccaagctgacattg
catggtcttgttcagcactacattaaattgagcgagttggagaaaaatcgcaagttgaat
gacctccttgatgcattggacttcaaccaagttgttattttcgtcaaaagtgtgagcaga
gcagctgagttgaacaaattactggtggaatgtaacttcccttctatttgcattcactct
gggatgtcccaagaagaaaggttaacacgttacaagggtttcaaggaaggtcacaaaaga
attcttgttgcaactgatctggttggcagagggatagatattgagcgtgttaacattgta
attaactatgacatgccagactctgctgatacctacttgcacagggttggtagagctggt
cgatttggtaccaagggacttgcaattacatttgtagcttctgcttctgactcggatgtt
cttaatcaggtgcaagaaaggtttgaggtcgacataaaggagcttcctgagcaaattgac
acctctacatacatgccatcatag
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