Papaver somniferum (opium poppy): 113355842
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Entry
113355842 CDS
T05758
Name
(RefSeq) pre-mRNA-processing-splicing factor 8A
KO
K12856
pre-mRNA-processing factor 8
Organism
psom
Papaver somniferum (opium poppy)
Pathway
psom03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
psom00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
113355842
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
psom03041
]
113355842
Spliceosome [BR:
psom03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
113355842
Complex C
U5 SnRNP specific factors
113355842
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PROCN
PRP8_domainIV
U6-snRNA_bdg
PRO8NT
U5_2-snRNA_bdg
PROCT
RRM_4
JAB
Motif
Other DBs
NCBI-GeneID:
113355842
NCBI-ProteinID:
XP_026454587
LinkDB
All DBs
Position
3:complement(35445232..35456880)
Genome browser
AA seq
2357 aa
AA seq
DB search
MWNNNVGGASSSSSQPVAPPGTGGSSIPPPPAMQPLYSIPPTPAETEALLEEKARKWMQL
NSKRYGDKRKFGFVETQKEDMPPEHVRKIIRDHGDMSSKKYRHDKRVYLGALKFIPHAVY
KLLENMPMPWEQVRDVKILYHITGAITFVNEIPWVVEPIYLAQWGTMWIMMRREKRDRRH
FKRMRFPPFDDEEPPLDYADNLLDVDPLEPIQLEMDEEEDSAVYTWFYDHKPLVKTKLIN
GPSYRRWHLSLPIMATLHRLAGQLLSDLIDRNYFYLFDMESFFTAKALNMCIPGGPKFEP
LYRDMEKGDEDWNEFNDINKLIIRSPLRTEYRIAFPHLYNNRPRKVKLCVYHTPMIMYIK
TEDPDLPAFYYDPLIHPILSINKDKKEKKDDEEEDDEFVMPEGVEPLLQNTQLYTDTTAA
GISLLFAPRPFNMRSGRMRRAEDIPLVSEWYKEHCPPSYPVKVRVSYQKLLKCFVLNELH
HRPPKAQKKKHLFRSLQATKFFQSTELDWAEAGLQVCKQGYNMLNLLIHRKNLNYLHLDY
NFNLKPVKTLTTKERKKSRFGNAFHLCREILRLTKLVVDANIQFRLGNVDAFQLADGLQY
TFSHVGQLTGMYRYKYRLMRQIRMCKDLKHLIYYRFNTGPVGKGPGCGFWAPMWRVWLFF
LRGIVPLLERWLGNLLARQFEGRHSKGVAKTVTKQRVESHFDLELRAAVMHDVLDAMPEG
IKQNKARTILQHLSEAWRCWKANIPWKVPGLPVPIENMILRYVKSKADWWTNVAHYNRER
IRRGATVDKTVCRKNLGRLTRLWLKAEQERQHNYLKDGPYVTPEEAVAIYTTTVHWLESR
KFSPIPFPPLSYKHDTKLLILALERLKESYSVAVRLNQTQREELGLIEQAYDNPHEALSR
IKRHLLTQRAFKEVGIEFMDLYSYLIPVYEIEPLEKITDAYLDQYLWYEGDKRHLFPNWI
KPADSEPPPLLVYKWCQGINNLQGIWDTGDGQCVVMLQTKFEKFFEKIDLTMLNRLLRLV
LDHNIADYVTAKNNVVLSYKDMSHTNSYGLIRGLQFASFVVQYYGLVLDLLLLGLTRASE
IAGPPQMPNEFITFWDTKVETRHPIRLYSRYIDRVHILFRFTHEEARDLIQRYLTEHPDP
NNENMVGYNNKKCWPRDARMRLMKHDVNLGRSVFWDMKNRLPRSITTLEWENSFVSVFSK
DNPNLLFSMCGFEVRILPKIRMTQEAFSNTKDGVWNLQNEQTKERTAVAFLRVDDEHMKV
FENRVRQILMSSGSTTFTKIVNKWNTALIGLMTYFREATVHTQELLDLLVKCENKIQTRI
KIGLNSKMPSRFPPVIFYTPKEIGGLGMLSMGHILIPQSDLRYSQQTDVGVTHFRSGMSH
EEDQLIPNLYRYIQPWESEFIDSQRVWAEYALKRQEAQSQNRRLTLEDLEDSWDRGIPRI
NTLFQKDRHTLAYDKGWRVRTDFKQYQVLKQNPFWWTHQRHDGKLWNLNNYRTDVIQALG
GVEGILEHTLFKGTYFPTWEGLFWEKASGFEESMKYKKLTNAQRSGLNQIPNRRFTLWWS
PTINRANVYVGFQVQLDLTGIFMHGKIPTLKISLIQIFRAHLWQKVHESVVMDLCQVLDQ
ELDALEIETVQKETIHPRKSYKMNSSCADILLFAAHRWPMSKPSLVAESKDVFDQKASNK
YWIDVQLRWGDYDSHDIERYTRAKFMDYTTDNMSIYPSPTGVMIGIDLAYNLHSAFGNWF
PGSKPLLAQAMNKIMKSNPALYVLRERIRKGLQLYSSEPTEPYLSSQNYGEIFSNQIIWF
VDDTNVYRVTIHKTFEGNLTTKPINGAIFIFNPRTGQLFLKVIHTSVWAGQKRLGQLAKW
KTAEEVAALVRSLPVEEQPKQIIVTRKGMLDPLEVHLLDFPNVVIKGSELQLPFQACLKI
EKFGDLILKATEPQMLLFNLYDDWLKSISSYTAFSRLILILRALHVNNEKAKMLLKPDTT
VVTEPHHIWPSLTDDQWMKVEVALRDLILSDYAKKNNVNTSALTQSEIRDIILGAEITPP
SQQRQQIQEIEKQQKESSQLTAVTTKTTNVHGEELIVTTTSPFETQQHVSKTDWRVRAIS
ATNLYLRVNHIYVNSEDIKETGYTYIMPKNILKKFICVADLRTQIAGYLYGVSPPDNPQV
KEIRCIVMVPQLGTHQDVKLPLALPEHDFLNDLEPLGWMHTQPNELPQLSPQDLTGHAQI
LESNKQWDGEKCIILTCSFTPGSCSLTAYKLTPSGYEWGRANKDSGSNPHGYLPTFYEKV
QMLLSDRFLGFYMVPDSGSWNFNFNGVKHNPNLKYGIKLGTPREYYHEDHRPTHFLEFSN
IEEGDNMAEGDREDKFT
NT seq
7074 nt
NT seq
+upstream
nt +downstream
nt
atgtggaacaacaacgtgggaggagctagtagctcctcttcacaacctgttgcaccacct
ggtactggtggttcttcaattcctccaccaccagcgatgcaaccattgtatagtatacca
ccaactccagctgaaactgaagcccttttagaagagaaagcacgtaagtggatgcaactt
aactctaaaagatatggtgataagaggaagttcggttttgttgagactcagaaagaagat
atgcctcctgaacatgttcgtaaaatcataagagaccatggagacatgtcgtccaagaaa
tatcggcacgataaaagagtttatctcggagctcttaaatttatccctcatgcagtctac
aagctgcttgagaacatgccaatgccttgggagcaggtgcgggatgtgaagattttgtat
cacattactggagcaatcacattcgtgaatgagataccatgggttgttgaacctatatat
ttggcacagtggggtacaatgtggattatgatgcgaagggagaaaagggatcgtcgacat
ttcaagaggatgcggtttccaccttttgatgatgaggaaccaccattagactatgctgac
aatctgttagatgtggatcccttggagccaatccaattagagatggatgaagaggaagat
tctgcagtttatacatggttttatgaccataagcctcttgtcaagacaaagctcatcaat
ggacctagttacaggaggtggcatctgtctcttccaataatggcaactctacatcgtctt
gctggacagcttctttctgatttgatcgacagaaactatttctacttatttgatatggaa
tccttctttacggcaaaagcattaaacatgtgcattcctggtggtcccaaatttgagcct
ttgtatcgtgatatggagaaaggggatgaggactggaatgagtttaatgacatcaataaa
cttatcatccggtctcctctcaggacggagtatagaattgcgtttcctcatctatacaac
aataggcctaggaaagtgaagctctgtgtttatcatacaccgatgattatgtatattaaa
actgaggatcctgatttacctgcattctactatgatcctttgatccaccccatactttcc
attaacaaagacaagaaagaaaagaaagatgacgaagaagaggacgatgagtttgttatg
ccggaaggggtggagcctttgcttcaaaacactcagctatacactgatactaccgctgca
ggtatttcgttactgtttgccccacgccctttcaacatgagatctggtaggatgcgacgt
gctgaagatattcctcttgtctcagagtggtacaaggagcactgtcctccatcgtatcct
gttaaagtccgggtgagttaccagaaattgttgaaatgttttgtgctgaatgagttgcat
caccgaccacccaaggctcagaagaagaagcacttgttccgttcactccaagctactaag
tttttccagagtactgagttggattgggctgaagccggtcttcaagtttgtaagcaagga
tacaacatgttgaatcttttgattcacagaaaaaatttgaattatctccatcttgattac
aattttaatctgaaacccgtgaagactcttactacgaaggaacgtaagaagtcacgtttt
ggtaatgcgtttcatctgtgtcgtgaaatcttgcgtctgacgaaacttgtggtggatgcc
aacatccaattccgtttggggaatgtagatgcattccaattggcagatggacttcagtac
acattctcacacgttggtcagctgactggtatgtatcggtacaaatacagacttatgcgg
cagatcagaatgtgtaaagacttgaagcacttaatatattaccgcttcaatactggacct
gttgggaaaggacctggctgtggtttctgggcgcctatgtggagggtatggctgttcttc
cttcgtggaattgtgcctctgttagaaagatggcttggaaatttattagctaggcaattt
gaaggacgtcattctaagggagttgccaagactgtaactaagcaacgtgttgagagtcac
ttcgacttggaacttcgagctgctgttatgcatgatgtgcttgatgcaatgccagagggt
attaagcaaaataaagccaggactatcttgcagcaccttagtgaagcatggcgttgctgg
aaagctaacattccctggaaggttcctggtctacctgttccaattgagaatatgattctt
cgttatgtcaagtcaaaagcagattggtggacaaatgttgcccactacaatcgtgagcgt
attagaagaggtgccacagtcgacaagactgtttgtagaaagaatttaggaagattgacc
cgtctgtggttaaaggctgaacaggagcgacaacacaattatttgaaggatggtccatat
gtcaccccagaagaagctgttgctatttacaccacgactgtgcattggctagaatcaagg
aagttctcaccaatacctttccctcctttgtcctacaagcatgacacaaagcttctcatt
cttgcgttagagaggctgaaggaatcatatagtgtggcggtgaggttaaaccagactcaa
agagaggaattaggtctcatcgaacaagcctatgacaatcctcatgaggcgttgtcacga
ataaaacgtcaccttcttacacagcgtgcttttaaagaggttggcattgagttcatggac
ttgtacagttacctgattccagtgtacgagattgagccactggaaaagattacagatgca
taccttgaccaatatctttggtatgaaggggacaaacgtcatctctttcccaattggatt
aagcctgctgactctgaaccacctccacttttagtgtataaatggtgtcaaggtatcaat
aacttgcaaggtatatgggacaccggtgatgggcagtgtgtagttatgctgcagacgaag
tttgagaagttctttgaaaagatcgacttgactatgcttaataggcttttgcgtttggtt
ctggaccacaatattgctgattacgttactgctaagaataatgtcgtgttatcctacaag
gatatgagccacactaactcgtatggtctgattcgtggtcttcaatttgcctcgtttgtt
gttcagtattatggactcgtgctggatctcttgctccttggtttgactcgggcgagtgaa
atcgcgggccctcctcagatgccaaatgaattcattactttttgggatacaaaagttgaa
acaaggcatccaatccgattatattcccgatatatagatagagtgcacattttgttccga
tttactcatgaagaggcacgagatcttatccagcggtatcttaccgaacatcctgatccc
aacaatgaaaacatggttgggtataacaacaagaagtgttggccaagggatgcaagaatg
aggctcatgaaacatgatgttaatcttgggcgaagtgtcttctgggatatgaaaaatcgg
cttcctcgaagtatcaccactttggagtgggagaacagttttgtttctgtattcagcaag
gacaatcccaatttgctcttcagcatgtgtggatttgaagtacggatactgccaaagata
agaatgactcaagaggctttcagcaatacaaaggacggagtctggaatctgcagaatgaa
cagacaaaagaacgaactgcagttgcatttttacgtgttgatgatgagcatatgaaagta
tttgaaaatcgtgttaggcagatccttatgtcgtcagggtcaacaacattcacaaaaatt
gttaacaagtggaatacagctcttataggtcttatgacatatttccgagaagcaactgtg
catacccaggaactattagatttgctggtcaagtgtgagaataaaattcaaactcgtatc
aagattgggctaaattcaaaaatgcctagcagatttcctcctgtcattttctacacgccg
aaagaaataggaggccttggtatgttatcgatgggtcacatattgattccacaaagtgat
cttagatacagtcaacaaacagatgttggggtaactcatttcaggagtggtatgagtcat
gaagaggaccagctaattccaaatctttatcgttacatacagccatgggagagtgagttc
atagattcacaacgtgtttgggccgagtatgcattgaagaggcaggaggcacagtcccag
aacaggcgcttaactctcgaggatcttgaggattcttgggataggggaatacctcgaatc
aatactctgtttcaaaaggatcggcacactcttgcatatgacaagggatggagagtgcgt
actgactttaagcagtatcaagttctaaagcagaatcctttctggtggactcaccagcga
cacgatgggaaattgtggaatttgaataactacaggacggatgtcatccaggcacttgga
ggagtagagggtattctggagcataccttgttcaagggaacatactttccaacttgggaa
ggtcttttttgggagaaagcatctggtttcgaggagtctatgaaatacaagaagctgacc
aatgcacagagatccgggcttaaccaaatacccaaccgtaggtttaccctttggtggtca
cctaccataaatcgtgctaatgtgtatgtgggtttccaagttcaattagacctgacgggt
atattcatgcatggaaagattcccactttgaagatatctttgattcagatattccgtgct
catttgtggcaaaaggtacacgagagtgtagttatggatctgtgccaagttttagatcaa
gagttagatgcactggagatagaaactgtgcagaaggagacgattcatccaaggaagagt
tataagatgaatagttcctgtgctgatattcttctttttgctgcccatcggtggcctatg
tcaaagcctagtctggttgccgagtcaaaggatgtgttcgaccagaaagcaagcaataaa
tactggatagatgtacagcttcggtggggtgactatgattcccatgatattgaacgttac
actcgagcaaagtttatggattatacaactgacaacatgtctatctatccttcaccgact
ggagtgatgattggtattgatctggcatacaatttgcattctgcatttggtaactggttc
cccggatcgaagccgcttcttgctcaagccatgaataagatcatgaagtcaaatccagct
ttgtatgttttgagggagcgtatcaggaaggggttacagttgtattcttctgagcctaca
gagccatatctgtcatctcaaaactatggagagattttcagcaatcaaataatatggttt
gtggatgacaccaatgtgtatcgtgtaactatccacaaaacatttgaagggaatctcacg
actaagcccatcaatggtgctatttttatattcaatccaaggactgggcaattgtttctg
aaggtcatccatacaagtgtgtgggcagggcagaaacgtctcggacagctggccaagtgg
aaaactgctgaggaagtagctgctcttgtgcggtccttgccagttgaagagcagccaaag
cagattatcgtcactcgtaagggaatgcttgaccctctggaggtccacttgcttgatttc
cccaatgtggttatcaaaggcagtgagttgcagcttccattccaggcttgcttgaagatt
gagaaatttggtgatttgattctaaaggcgactgagccacaaatgcttctgtttaatctc
tatgatgattggctgaagagcatatcgtcttacacggctttctcgcgtttgattttaatc
ttgcgtgccttacatgtgaataacgagaaggcaaagatgttgctaaagcctgatacaacg
gttgtcactgaaccacatcacatttggccttctctcactgatgatcaatggatgaaggta
gaggttgctttgagggatcttatactctcagattatgcaaagaagaataatgtgaacaca
tcggcgctgacccagtctgagattcgtgatattattcttggtgctgagattactccaccc
tcgcaacaacgtcagcagatacaagagattgaaaagcaacagaaggaatcaagccagctg
acagcagtcacaacaaagacgacaaatgtgcatggtgaagaactcattgtcaccacgacg
agtccttttgagacccaacagcatgtatcgaaaaccgattggcgtgtgagagcaatttca
gccaccaacctttatctccgtgttaatcacatttatgttaattcggaggacattaaggag
acaggatacacttatatcatgcccaagaacattttgaagaagttcatctgtgtagcagat
ctccgaacacaaattgcaggttacctgtatggtgtaagcccccccgacaaccctcaagtg
aaagagattcgctgtattgtcatggttcctcagttgggtacacatcaagatgtcaaactt
ccattggctctgccagagcatgatttcttgaacgacctggagccgcttgggtggatgcat
actcaaccaaacgagcttcctcagctgtccccacaggatctgactggccatgctcaaatt
cttgaaagtaacaagcagtgggatggagaaaagtgcatcatcttgacctgcagtttcact
ccgggttcatgctcattaactgcctacaaacttaccccttcagggtacgagtgggggcgt
gccaacaaggactccggaagcaatcctcatggttaccttccaactttctatgagaaggtt
cagatgctcctcagtgatcgcttcctagggttttacatggttcctgacagtggatcgtgg
aatttcaacttcaatggagtgaagcataaccctaatctgaagtacgggataaagcttgga
acacctcgtgagtattatcacgaagatcacaggccaactcattttcttgagttcagtaat
atagaagagggagacaacatggctgaaggagatcgggaggacaagtttacctag
DBGET
integrated database retrieval system
