Papaver somniferum (opium poppy): 113356393
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Entry
113356393 CDS
T05758
Name
(RefSeq) splicing factor 3B subunit 3-like isoform X1
KO
K12830
splicing factor 3B subunit 3
Organism
psom
Papaver somniferum (opium poppy)
Pathway
psom03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
psom00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
113356393
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
psom03021
]
113356393
03041 Spliceosome [BR:
psom03041
]
113356393
03036 Chromosome and associated proteins [BR:
psom03036
]
113356393
Transcription machinery [BR:
psom03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
SAGA/TFTC/STAGA complex
113356393
Spliceosome [BR:
psom03041
]
Complex A
U2 snRNP components
U2 snRNP specific factors
113356393
Complex B
113356393
Complex C
U2 SnRNP specific factors
113356393
Chromosome and associated proteins [BR:
psom03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
STAGA complex
113356393
TFTC complex
113356393
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Beta-prop_RSE1_2nd
Beta-prop_RSE1_1st
CPSF_A
Motif
Other DBs
NCBI-GeneID:
113356393
NCBI-ProteinID:
XP_026455290
LinkDB
All DBs
Position
3:complement(67249206..67259762)
Genome browser
AA seq
1364 aa
AA seq
DB search
MGSLEEDSSSTAAIACSQSRSSNPSEEGTHYLAKCVLRGSAVLHAVYGHLRSSSSFDIVF
GKETSIELVVVGEDGVVQSVCEQTVFGIIKDLSVLRRSEKFCQPNTQEPGKDLLIVLSDS
GKLSFLKFCNEMHRFFPVSHFQLSNPGNSRHQLGHKLAVDNHGCFVAVSAFEERLALFSV
SMLDDSSIINKNIFYPPESEGDIPSVVQDVHGTNISGTIWSMCFISKDVSQSSKGERNAT
LAIVLNRKGAVSNELVLLEWDTHENAVHVISQYIEAESLAMNIVEVPYSYGFAVLFRVGD
ALLMDLSDPHNPRCVHKICLGLLPIEDGVDDDVAVRALLELGMEMSKGDDPMIIDNENGQ
YNSLFKSMCSWSWEPGHNSNPTMFVSLDTGELLTLEISFEFDGSKMNLSEPLYKCLPCKT
LLWVKGDFIVALTEMGDGSVLKFEVGKLSYMSPVQNIAPVLDSVVDYHDDKQDQMFACCG
VAPEGSLRIIRSGISVENLLRTAAIYQGITGTWTLRMKVLDSFDSFLVLSFVEETRVLSV
GLSFSDVTDAVGFQPDACTLACGLVGDGLLVQIHRNAVRLCLPTTIAHPEGIPLSAPICT
SWFPDNVNISLGAVGQNMIIVATSNPCFLFILGARSLSAYHYEIYEMQHVRLQNEVSSIS
IPQRISEYKSSTSVVSLANISKPCFGLPIGVEISDTFVIGTHRPSVEILSFVPEEGLRIV
ACGIISLSNTLGTAINGCVPQDVRLVLVDRLYVLSGLRNGMLLRFEWPNMSTLPPSLELP
QQSPFMISNMAASLVSSSSSNEQRRDSNILEKAEKTPIHLELIAIRRIGVTPVFLVPLCD
SLDSDIIALSDRPWLLQTARHSLSFTSISFQPATHVTPVCSMDCPKGILFVAENRLHLVE
MVHSKRLNVQKFSLGGTPRKVVYHSESKLLLVMRTELSGESCSSDICCVDPLSGSLLSSF
KLEPGETGKSMQLVKVGDERVLVVGTNRFGGRAIMHTGEAESSKGRLLVLCLEHTLNSVN
SSFREIVGYATEQLSTSSLCSSPEDNGFEGVKLEETEVWQLVLAYQTIIPGVVLAVCPYL
DRYFLASAGNFFYLYGFVNENPQRVRRLAYARTRFTITSLASEFTRIVVGDCRDGVLFYS
YDEEPRRLKQLYCDPVQRLVADCTLMDMDTAVVSDRKGNLTVLSCPNRVEDNASPECNLT
LSCSYYIGETAMSIRKGSYSYKLPVDDTPNGCDIADPILNSSHNSIVASTMLGSVVVFIA
ISREEFELLKGVQARLIIHPLTAPILGNDHNEFRGRGSAAGVSKMLDGDMLTQFLELTSS
QQESVLAVPLGLKETGASISMPPHKSISVNQVVRLLERVHYALN
NT seq
4095 nt
NT seq
+upstream
nt +downstream
nt
atggggagtttagaagaagattcatcatctactgctgctattgcttgtagtcaatctcga
tcatcaaatccttcagaagaaggtactcattatctcgctaagtgtgtacttcgaggaagt
gcggttcttcatgctgtttacggacatcttcgttcttcatcttcattcgatatcgtattc
ggaaaggaaacttcaattgagttggtggtagtcggtgaagatggagttgtgcaatccgtc
tgtgaacagaccgtatttggtatcattaaggatctttctgttttacggcggagtgagaag
ttttgtcaaccaaatacccaggaaccggggaaagatcttttgattgttctttctgattct
gggaagctttcttttcttaaattttgcaacgaaatgcacaggttctttcccgtatcacac
ttccaactttcaaatcctgggaactcaagacatcagctaggacataagttagcggttgac
aatcatggctgttttgttgctgttagtgcttttgaagaacgactggctttgttttctgta
tctatgttggatgacagcagcattattaataagaacatattctatccacctgagagcgaa
ggggatataccgagtgttgttcaggatgtccatggaaccaatatcagtggcacaatttgg
agcatgtgcttcatttcaaaggatgttagtcaatcaagcaagggtgaacgtaatgcaaca
ctagcaattgttctgaataggaagggtgctgtgtcgaatgagctggtgctactggagtgg
gatactcatgaaaatgctgttcatgttatatctcagtatatcgaagctgagtctctagca
atgaacattgttgaggttccttactcttatggatttgctgttctgtttagggttggtgat
gctctcttgatggatctcagtgatcctcacaaccctcgttgtgtgcataaaatttgtctt
ggtcttttgcctattgaggacggtgttgatgacgatgttgctgtaagggctttactggag
ttgggaatggaaatgagtaaaggagatgaccctatgattattgataatgagaatggccag
tataattcactgtttaaaagtatgtgctcatggagttgggaaccgggacacaattcaaat
cctacgatgtttgttagtttagatacgggggagttgcttactttagaaatttcatttgaa
tttgatggtagtaaaatgaacttatctgagccgctctacaagtgtttaccttgcaagacg
cttttgtgggttaaaggggatttcattgttgcacttacagagatgggggatgggtcagtc
cttaagtttgaggtaggaaaactttcttatatgagtccagttcaaaacatcgctccagtt
ttagattcggttgtggattatcatgatgataaacaggatcagatgttcgcttgttgtgga
gtggctccagagggttcgttaaggattattcgaagtggtattagtgtggagaatctgttg
cgcaccgccgctatttatcaaggcataactgggacttggactttgcggatgaaagtctta
gattctttcgactcttttctcgtgctatcatttgttgaagagactagggtgctttcggtt
gggttaagcttcagcgatgtgaccgatgcagtcgggttccagcctgacgcttgtactttg
gcgtgtggccttgtaggtgatgggttacttgtccagatacataggaatgccgtgagactt
tgtttgcccacaacaatagctcatcctgaaggtatccctttgtctgctccaatttgtaca
tcttggttcccggataatgtgaatataagtttgggggcagttgggcagaacatgataatt
gtagcaacatctaatccctgcttcttatttattcttggggccaggtctttatctgcctat
cactatgaaatctatgagatgcagcatgtgaggctgcagaatgaagtctcatccatatct
ataccccaaaggatctcagaatacaaatcatcaacctcggttgttagtttagcaaatatt
agtaaaccttgctttggtcttcctattggggttgagattagtgatacttttgtcattggt
acccacagaccttcagtagaaattctctcatttgtacccgaagaagggctaaggattgtt
gcctgtgggattatttccctgagcaacacgcttggaactgctatcaatgggtgtgtcccc
caagacgtgaggctggttttagttgatcggttatatgtactttcaggattgagaaacgga
atgttacttcggtttgagtggccgaatatgtctaccttacccccatcgttggagttaccc
cagcagagcccttttatgatttctaacatggctgcatccttagtatcatcaagttcaagc
aatgaacaacgtcgagacagcaatatcctcgaaaaggctgaaaaaactcctattcattta
gaattgattgctattcgccggatcggtgtaacaccagtttttctggttcctttgtgtgac
tcccttgattccgacataattgctcttagtgatagaccgtggcttttgcaaactgcaaga
cacagcttgtcatttacatctatctcatttcaacctgcaactcatgtcactccagtgtgt
tctatggattgccctaagggaattttatttgtagcagagaaccgccttcatttggtggaa
atggtccacagtaagaggctaaatgtgcagaagttctctcttggaggtactccgcggaag
gttgtatatcatagtgaaagtaaattgctgcttgtgatgagaaccgagctaagtggtgaa
tcgtgttcatcagatatatgctgtgttgatccactttctggatcactgctgtcatcgttt
aagctcgaaccaggagaaacaggaaaatcaatgcagttggtgaaggttggagatgaacga
gtcttggtggtgggtaccaatcggtttggtggtcgagctatcatgcacaccggtgaagcc
gaaagtagcaaagggcgtctacttgtcctgtgcctggagcacacgctgaactcggttaac
agttcgtttcgtgaaattgttgggtatgccactgagcaactttcaactagtagtctttgc
agcagtcctgaggataatggttttgagggtgttaaactcgaagagactgaagtgtggcaa
ctagtacttgcttatcaaaccattataccaggagtagtacttgctgtctgcccatatctt
gatcgttactttttagcatctgctggtaattttttttatctatatggctttgtcaatgag
aatcctcaacgagtcagaagactggcttatgcgaggacacgctttacaattaccagtttg
gcttcagaatttactcgaatcgttgtcggtgattgtcgtgatggagttcttttctattcc
tatgatgaggagcctaggagacttaaacagctgtactgtgatccagtacagaggttagtt
gctgactgtacccttatggacatggacactgctgtggtctcagatcgaaagggaaacctt
actgttctgtcatgcccaaatcgggttgaagataatgcaagtccagagtgcaacttgaca
cttagttgttcttactacattggagagacagccatgagcatcagaaagggttcatattca
tacaaacttccagttgatgatacaccgaacggttgcgatattgcagacccaatactcaac
tcgtcacacaatagtattgtggccagcacgatgctaggaagtgtagtggttttcattgct
atctccagggaagaatttgagctcctgaaaggtgtgcaagctagactcattattcatccg
ttaactgctcccatcctgggaaatgaccacaacgaattccgagggcgtggttccgcggct
ggtgtgtctaaaatgcttgatggggacatgttaacacaattcttggagcttacgagttcg
cagcaagagtctgttctggcagttccacttggtttgaaggagactggagcatcaatttcg
atgcctcctcacaaatcaatctccgtcaatcaggttgttcgcttgcttgaacgagttcat
tatgcccttaactaa
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integrated database retrieval system
