Papaver somniferum (opium poppy): 113356528
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Entry
113356528 CDS
T05758
Name
(RefSeq) regulator of nonsense transcripts UPF3-like
KO
K14328
regulator of nonsense transcripts 3
Organism
psom
Papaver somniferum (opium poppy)
Pathway
psom03013
Nucleocytoplasmic transport
psom03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
psom00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
113356528
03015 mRNA surveillance pathway
113356528
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
psom03019
]
113356528
Messenger RNA biogenesis [BR:
psom03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
113356528
mRNA cycle factors
P-body specific factors
113356528
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
Smg4_UPF3
RRM_2
Motif
Other DBs
NCBI-GeneID:
113356528
NCBI-ProteinID:
XP_026455472
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Position
3:75887329..75895701
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AA seq
580 aa
AA seq
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MKDPSDRTKVVLRHLPPALTQSALMEQIDGRFAARYNWITFRPGKTSHKHQIYSRAYIDF
KKPDDVVEFAEFFDGHVFVNEKGAQFKAIVEYAPSQRVPKQWSKKDGRDGTILKDAEYLE
FLELLAKPVENLPSAEIQLERREAERAGAVKEAPFVTPLMEFIRQKRAAKNGSQGPSSNG
KPSRRSGGPSPSNSRPSSSKQRAEKKKASSMYVLRDSPKNTSVKEKPNYILVPRRDNQHR
SDKSTTVENVPSTADGAPGTVVPLRKKVMLLKGKEREITHASGSGSQPLVVTSPLKTSPG
ASNFKQNQRRDSREASAKIRTILSNKDAHSEQQLQSLTFEKDKRPPRPNNMRSVLKGSLS
GGSQAVSGSDFDSRRVADEKVILNDNHGFVSGNEKQEKRTRNKDRPDRGVWTLRRSEGSH
ASDESLSSSSSQLLSESVEGITITQHVPVHGITNPGDAVDIGFSNKLSSKPRNLETAVNN
FQGVNSSSAYDHPPNHGEMKVDMPSTSRSEVKAFGGGRSGYSTIENGSHRHSGRRGSAHA
VKDVDGYPSPSDGKPSKRVVAANYGSHEKRVWVQKSGSGS
NT seq
1743 nt
NT seq
+upstream
nt +downstream
nt
atgaaggatccttcggatcgaacaaaagttgtgcttcggcacttgcctcctgcgttaaca
cagtctgccctaatggaacaaatcgatggccgctttgctgcgagatacaactggattact
tttcgtcctggaaaaaccagccataaacatcaaatatattctcgagcttatatcgatttt
aagaagccggatgatgttgttgagtttgcggagttctttgatggccatgtgtttgtcaat
gagaaaggtgctcaattcaaagctattgtagaatatgccccttcacaacgggttccaaag
caatggtccaaaaaagatggtcgtgacgggacaatattgaaagatgctgaatatttggag
tttctcgaacttctggcaaaacctgttgagaatcttcccagtgcagagatacagttggaa
agaagagaagccgaacgagctggtgctgtgaaggaggctccctttgttacccctttaatg
gagtttattcgccagaaaagagctgcgaagaatggatctcaggggccatcatctaatggg
aagccgagtagaagatctggtggaccatcacccagtaattcaagaccatcttccagcaag
caaagggctgaaaagaagaaggcatcctcgatgtatgttttgagggacagtccgaagaat
acgagtgttaaggagaaaccaaattacatcttggtgccaaggcgagacaaccagcatcgt
tcagacaagtctactactgtagaaaatgtcccaagcactgcagatggagctcctgggact
gttgttccactaaggaagaaagtcatgcttttgaaagggaaagagcgagaaattactcat
gcttctggaagtggttctcaaccactagttgtaacttctccactgaaaacttcgcctggt
gcatccaatttcaaacagaaccagcgacgtgactcacgtgaggcaagtgcgaaaattaga
accatactgtccaataaggacgcacattctgagcagcaactccagtccttaactttcgag
aaggataagcgaccacctcggccaaacaacatgcgttcagttttgaagggcagtctttct
ggtggttcacaggctgtatctggttcagatttcgattcaagaagggttgcagatgagaag
gttattttgaatgataaccatggtttcgtctcaggtaacgagaagcaagaaaaacgcact
agaaataaggatcgacctgatcgtggagtatggactcttcgtcgttcagaaggttcacat
gcaagtgatgaatccttatcatcttcctcatcacagttgctgtcggaatctgtggaaggg
ataacaatcactcaacatgtacctgttcatggaattaccaatcctggggatgcagtggac
attgggttcagtaacaagctcagtagcaaacctcgaaacctggagacagcagttaacaat
tttcagggtgttaattcatcatctgcctacgaccacccaccaaatcatggagaaatgaaa
gtggacatgcctagtactagccgaagtgaagttaaagctttcggaggtggtcgcagtggt
tactctactatagaaaatggctcccatagacattctggtcgccgaggatcagcacatgcg
gtgaaggatgttgatggatacccgagtccaagtgatgggaagccatccaaaagagtagtc
gccgctaactatggttctcatgagaagcgagtatgggttcagaagtcaggctcaggttct
tag
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