Papaver somniferum (opium poppy): 113356682
Help
Entry
113356682 CDS
T05758
Name
(RefSeq) WD repeat-containing protein ATCSA-1-like
KO
K10570
DNA excision repair protein ERCC-8
Organism
psom
Papaver somniferum (opium poppy)
Pathway
psom03420
Nucleotide excision repair
psom04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
psom00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
113356682
09124 Replication and repair
03420 Nucleotide excision repair
113356682
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
psom04121
]
113356682
03400 DNA repair and recombination proteins [BR:
psom03400
]
113356682
Ubiquitin system [BR:
psom04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
Cul4 complex
Target recognizing subunit (DCAF)
113356682
DNA repair and recombination proteins [BR:
psom03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
Cul4-CSA complex
113356682
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
WD40_Prp19
WD40_WDHD1_1st
WD40_CDC20-Fz
Beta-prop_TEP1_2nd
Beta-prop_WDR90_POC16_2nd
Beta-prop_EML_2
WDR55
EIF3I
Beta-prop_CAF1B_HIR1
Beta-prop_RIG_2nd
Beta-prop_EIPR1
ANAPC4_WD40
Beta-prop_EML
Beta-prop_TEP1_C
NBCH_WD40
WD40_MABP1-WDR62_2nd
Beta-prop_SPT8
WD40_RFWD3
WDR90_beta-prop_4th
Beta-prop_WDR75_1st
Beta-prop_SCAP
Beta-prop_IFT122_1st
Beta-prop_IFT140_1st
Beta-prop_LRRK2
WD_LRWD1
WD40_MABP1-WDR62_1st
Beta-prop_DCAF12
Beta-prop_Vps41
Beta-prop_Nup120_160
Motif
Other DBs
NCBI-GeneID:
113356682
NCBI-ProteinID:
XP_026455674
LinkDB
All DBs
Position
3:complement(83346811..83351936)
Genome browser
AA seq
454 aa
AA seq
DB search
MWKVVGDRETGKLPPYSFINRVKSNRISSLELSNYKEIVSAHKGAVNSLQVDLIEGRYLL
AGASDGSIAVYDVQSATKHEGNGMVAKHEHILVVDKRHEQGHKYAVSSATWYPVDTGLFI
SGSYDQSVNVWDTNTTRVVVDFKLPGKVYRTAMSSVAGSHMLIATGTEDVQVRLCDIASG
AFTHTLSGHRDGVMAVEWSTSSEWVLVTGGCDGAIRFWDIRRAGCFQVLDQSRSQLGRRP
PLLEHFPTKVSTPKSFSAGQSSTIKVRAPQKKTANGTGAKRVPSLYRVPSQTKGSTGKRL
HPGLLSSHDRATAHYGAVTGLKVTENGMYLLSAGSDSRLRLWDIESGCNTLVNYEVKRIE
PRKALQLATTQDSSLVFVPCMATIKAFDVWSGRTSETFRGHYENVNCCWFNSQDQEMYTG
SNDRQILVWSPRKIRLDEMDEGGNNEQDQDCWSD
NT seq
1365 nt
NT seq
+upstream
nt +downstream
nt
atgtggaaggtggtcggagatagagaaactggtaaacttcccccctattcatttattaac
cgtgtcaaatccaatcgcatctcttctttggaactttcaaactacaaagaaatcgtctct
gctcataaaggagctgtcaattctctccaggttgatttgatcgaaggacggtatctgtta
gctggtgcttctgatggttcaattgcagtttacgatgttcaaagtgccacaaaacatgaa
ggaaatggcatggttgcgaagcatgagcacatattagttgttgacaagcgccacgagcaa
ggtcataaatatgcagtgtcctcggccacttggtatccagttgacacagggcttttcatc
agtggttcttatgatcagtctgtaaatgtatgggataccaatacaacacgagtggtagta
gattttaaattgcctggaaaggtctatcgaacagctatgtcgtcagtagctggttctcac
atgctaattgctactggaactgaagatgttcaagttcgtctatgtgacattgcttcaggg
gcatttacacacacattatctggtcatcgtgatggtgtaatggcagtcgaatggtctact
tctagtgagtgggttctggttactggcggatgtgatggagcaatacgtttttgggacata
aggagagcaggatgttttcaagttttagaccaatctcgatctcaacttgggagacgaccg
cctctccttgaacactttccgacaaaagtatcaacaccaaaatccttttcagcaggtcaa
tcttctaccatcaaggtgagggcaccacaaaagaaaacagctaatggtactggtgcaaag
cgggtgccatccctttatagagttccaagtcagaccaagggttcaaccgggaagagatta
catcctgggttgttgtccagtcatgatcgggctacagctcactatggtgctgttactggg
ctaaaagtaactgaaaatggaatgtatttgttgagcgcaggctctgattcacgattgaga
ttgtgggatattgaatctggctgcaacactcttgtgaactatgaagttaagcgcattgaa
ccccggaaggcattacagttggccactactcaggattcatcccttgtcttcgttccatgt
atggcaaccatcaaggcatttgatgtgtggtcaggtcgaacatccgagacatttcggggt
cattatgaaaatgtgaattgctgttggtttaattcacaggatcaggaaatgtatacaggt
agcaatgatagacaaattcttgtgtggtctccacgcaaaatacgacttgatgaaatggat
gaaggaggaaataatgagcaagatcaggactgctggagtgactga
DBGET
integrated database retrieval system
