Papaver somniferum (opium poppy): 113357216
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Entry
113357216 CDS
T05758
Name
(RefSeq) splicing factor-like protein 1
KO
K13095
splicing factor 1
Organism
psom
Papaver somniferum (opium poppy)
Pathway
psom03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
psom00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
113357216
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
psom03041
]
113357216
Spliceosome [BR:
psom03041
]
Complex A
Other components
Complex A specific factors
113357216
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SF1-HH
KH-I_KHDC4-BBP
RRM_1
KH_1
KH_12
eIF3g
zf-CCHC
RRM_10
PHD_4
KH_PNO1_2nd
RRM_7
zf-CCHC_2
Motif
Other DBs
NCBI-GeneID:
113357216
NCBI-ProteinID:
XP_026456337
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Position
3:122295897..122299877
Genome browser
AA seq
744 aa
AA seq
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MDSETLISSSATPNQLDHHHHYPDSETLVPPPQALATPNTDSIPNPETTNSSEQQNQLVS
QNGGGNSRSSGGGGEEETNSRRKRRSRWDPPTESENADSRTRKRKSRWADDDAKPVIQLP
DFMKEFTGTLDLDPEVQALNIRLLDISRILSSGLPLDGRPEGARSPSPEPIYDNMGVRIN
TREYRNRERLTKERSDIISQLIKRNPAFKPPADYRPPKLQKKLYIPMKEYPGYNFIGLII
GPRGNTQKRMEKETGAKIVIRGKGSIKEGRLQQKRDLKPDPAENEDLHVLVEAETQDALE
AAAGMVEKLLQPVDELLNEHKRQQLRELAALNGTIRDEEYCRLCGEPGHRQYACPARTST
FKSDVLCKICGDGGHPTIDCPMKGTTGKKMDDEYQNFLAELGGSGPESMTKPNSAVALLG
AGSNSSGSVPPWASGNNSGGGGIGSATQTGLVTNGAKTAKDYDDTNLYIGYLPPNLDDDS
LIRLFQPFGDIVMAKVIKDRATNVSKGYGFVKYSDVAQANQAIASMNGYPLEGRLIAVRV
AGKPTPPAVPSGPPAHKMPTYPVQDQAIGGYASQQFTSGGPLPNPPHSGYMAAPVPWGPP
PPYAPYAPPPPGAHMYNPVQGQSMPPYGAPYPPTHQTTPPGAPSHSTPSEGQYSFPPGVQ
SQNTQPAPSSMYGVPPNPSYPPPNYPSYYAVPPPPVSHSMGDHSQNMAAVPWASYPPVPP
PVSSDEQTSSGVEAEYEKFIGDLK
NT seq
2235 nt
NT seq
+upstream
nt +downstream
nt
atggactccgaaaccctaatttcttcttctgctaccccaaatcaattagatcatcatcat
cattatcctgattcagaaaccttagttcctcctccacaagccctagctactccaaataca
gattcaattccaaatcccgaaacaacaaattcatcagagcagcagaatcaattggtatct
caaaacggcggtggtaatagtaggagtagtggcggtggtggtgaagaagaaacaaacagt
agaagaaaacgtcggagtagatgggatccaccgactgaatctgaaaacgctgattctaga
actcgaaagaggaaatctcgttgggcagatgatgatgcaaaaccagtaattcagctacca
gatttcatgaaggaatttacaggtactctggatcttgatccagaagttcaagctcttaat
atacgattattagacattagtagaattttatcatctggattaccattagatggccgtcct
gaaggtgctcgttcaccttcacctgaacctatttatgataacatgggtgttagaattaat
actagagaatatcgtaatagggaacgattgacgaaagaaaggtctgatattatcagtcag
cttattaaacgaaaccctgcgtttaagcctccggctgattatcgtcctccaaagcttcag
aagaagttgtatatacctatgaaggagtatccagggtacaattttattggtcttataatt
ggtcctaggggaaatacacagaagagaatggaaaaggagactggtgcgaaaattgttatt
cgcggcaagggttcgattaaagaaggaaggttacagcaaaaacgtgatttgaaacccgat
cctgctgagaatgaagatttacatgtgttggttgaagctgagactcaggatgcacttgag
gctgctgcagggatggtggaaaagttgttgcagccagttgatgagctacttaatgagcat
aagaggcagcagttgagagaacttgctgctttgaatggaaccataagggatgaagagtat
tgtaggttgtgtggtgaacctggtcatcgtcagtatgcttgtcctgctcgtacctcaact
tttaagagtgatgttctttgtaaaatatgtggggatggaggtcatcctaccattgattgt
cccatgaagggcactactggaaagaaaatggatgatgaataccaaaatttcctggcggaa
ttaggtggtagtggtcctgaatcaatgaccaagccaaattcagcagtggctcttctcggg
gctgggtctaatagttcgggtagtgttcctccttgggcaagtggtaacaactctggagga
ggaggtattgggtctgcaacgcaaacaggtttggtgacaaatggagccaagaccgcgaag
gattatgatgatacaaatttgtatattgggtatttgccaccaaatcttgacgatgattct
ttaattcgtttgttccaaccctttggcgatattgtgatggctaaggttataaaggatcgg
gcgacaaatgtaagcaaaggttatggttttgtgaagtattctgatgttgcacaggcgaat
caagctatagctagtatgaatggctaccctctagaggggagactgatagctgttagggtt
gcaggtaaacctactccgcctgcagtgccatctggacctccagctcacaagatgcctact
taccctgttcaagatcaggctattggaggatatgcttctcagcaattcacatctggtgga
cctcttccgaatccacctcatagtggctacatggcggcaccagttccttgggggccacct
cctccttatgctccctatgccccaccccctcctggtgcacatatgtacaatcctgtgcaa
ggtcagtctatgccaccttatggtgcaccatatcctccaacacaccaaaccacgcctcct
ggtgcaccatctcatagtacacctagtgaaggacaatatagcttcccccctggtgttcaa
tcccaaaatactcaacctgcaccttctagtatgtatggagtgcctccaaatccctcgtac
cccccaccaaattacccatcttattatgctgtacctcctcctcctgtatcacattcaatg
ggtgaccactcacaaaacatggctgctgttccttgggcctcatatccaccagtgccacca
cctgtttcatctgatgagcagacatcttctggtgttgaggctgagtatgagaagttcata
ggggatctgaaatga
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