Papaver somniferum (opium poppy): 113358781
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Entry
113358781 CDS
T05758
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH10-like
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
psom
Papaver somniferum (opium poppy)
Pathway
psom03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
psom00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
113358781
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
psom03019
]
113358781
03041 Spliceosome [BR:
psom03041
]
113358781
03009 Ribosome biogenesis [BR:
psom03009
]
113358781
03016 Transfer RNA biogenesis [BR:
psom03016
]
113358781
Enzymes [BR:
psom01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
113358781
Messenger RNA biogenesis [BR:
psom03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
113358781
Spliceosome [BR:
psom03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
113358781
Complex C
U4/U6.U5 tri-SnRNP related factors
113358781
Ribosome biogenesis [BR:
psom03009
]
Eukaryotic type
Pre-60S particles
Helicases
113358781
Transfer RNA biogenesis [BR:
psom03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
113358781
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
MTR4_beta-barrel
DSHCT
DEAD
MTR4-like_stalk
Helicase_C
DEXQc_Suv3
CHD_PDZ-protease
nSTAND3
Motif
Other DBs
NCBI-GeneID:
113358781
NCBI-ProteinID:
XP_026458246
LinkDB
All DBs
Position
3:complement(223460114..223466581)
Genome browser
AA seq
1001 aa
AA seq
DB search
MEEESQSLGKRKSVEEASEVTPNEDSEAQKPTESISKRRTLAKTCVHEVAVPKDYVPSLD
ETIHGTLANPEFNGTMAKTYEFKLDPFQQVSVSCLERKESVLVSAHTSAGKTAVAEYAIA
MSFRDKQRVIYTSPLKALSNQKYRELTQEFSDVGLMTGDVTISPNASCLVMTTEILRGML
YRGSEVLKEVAWVIFDEIHYMKDRERGVVWEESIIFLPPAIKMVFLSATMSNATEFAEWI
CYLHKQPCHVVYTDFRPTPLQHYVFPVGGSGLYLVVDENEQFKEENFAKLQDTFNKQKPN
DGNKGGGPKASGRIAKGGTAAGGSDIFKIVKMIMERKFQPVIIFSFSRRECEQHAMSMAK
LDFNTKEEKDDVEEVFRKAILCLNEEDRNLPAIELMLPLLQRGIAVHHSGLLPIIKELVE
LLFQEGLVKALFATETFAMGLNMPAKTVVFTSVKKWDGDSHRYIGSGEYIQMSGRAGRRG
KDDRGICIIMIDEKMEMATLKDMVLGRPAPLLSTFRLSYYSILNLMSRAEGQFTAEHVIK
NSFHQFQYEKALPDIGDKVSKLEKEAEMLDASGEAEVAEYHKLRLDIALLERKMMSEITR
PERVLFFLLPGRLVKVQDGATDWGWGVVVNVVKKPSSASNTLPASSSRGSDYIVDTLLHC
SPGSSENGTRSKPSPPRPGERGEMHVVPVQMPLISALSKIRISVPSDLRPLEARQSILLA
VQELGTRFPQGLPKLNPVKDMAIEDHEFVDVMSQIEELEKKLHDHPVHKSSQNKEQAKCF
QRKAEVNHEIQQLKSKMRDSQLQKFRDELKNRSRVLKKLGHIDADGVVQLKGRAACLIDT
GDELLITELMFNGTFNDLDPHQVAALASCFVPGDRSNEQIHLRTELGKPLQQLQDSARRI
AEIQRECKLEVDVEEYVESTARPYMMDVIYCWSKGATFAEVIEMTDIFEGSIIRLARRLD
EFLNQLKAAAKAVGEVDLEAKFGASSESLRRGIMFANSLYL
NT seq
3006 nt
NT seq
+upstream
nt +downstream
nt
atggaagaagaatcacagtcacttgggaagaggaaatctgtagaggaggcttcagaagtt
acacctaatgaagattcagaggcacagaaacctactgaatctatctctaaacgacgaaca
ttagctaaaacatgtgttcatgaagttgcagtaccaaaagattatgtaccttcattagat
gaaaccattcatggtacattagctaatcctgagtttaatggtacaatggcgaaaacatat
gagtttaaactcgatccgttccaacaagtttcagtttcttgtttggagaggaaagaatct
gtgttggtttcggcacatacttcagctggtaaaacggctgtcgcggagtatgcgatagct
atgtcgtttagagataaacaaagggttatttatacttcgcctttaaaagcgttgagtaat
cagaagtatagggagttgacgcaggagttttcggatgttggtttaatgactggtgatgta
acgatatctccgaatgctagttgtttagtcatgaccactgagatattgagggggatgtta
tatagaggttctgaggttttgaaagaagttgcttgggttattttcgatgagattcattat
atgaaggatagggaaagaggtgttgtttgggaagagagtattatatttttgccgccagca
attaaaatggtgtttttgtcagctacaatgtcgaatgctactgagtttgctgaatggatc
tgttatttgcataaacagccttgtcacgtggtttatacagatttcagacctactcctttg
cagcattatgtgtttcctgttggtgggtcgggtttgtatcttgttgtggatgagaacgag
cagtttaaagaggagaattttgcaaaattacaggatacttttaataaacagaagccgaat
gatgggaataagggcggaggtcctaaagcaagcggtaggattgcaaagggcggtactgct
gctgggggttccgacatattcaagattgtcaagatgatcatggaacggaaatttcagcct
gtcatcattttcagctttagtagaagagaatgcgaacaacatgcaatgtctatggccaag
cttgatttcaataccaaagaggagaaggatgacgttgaagaggtttttcggaaagcaata
ctttgtttaaatgaggaggacaggaacttacctgctattgaattaatgttgcccctatta
cagaggggtattgctgtgcatcactctggacttcttccaataattaaagaattggtggaa
cttctcttccaagaaggactcgtcaaggctctttttgctacagaaacatttgccatgggt
ttgaacatgcctgcaaaaactgttgttttcacatctgtcaagaaatgggatggtgatagt
catcgttatattggatcaggtgaatatatccagatgagtgggagagcgggacgccgtggg
aaagatgaccgtggtatctgcatcataatgattgatgagaagatggaaatggctactcta
aaagatatggttttgggtagacccgctccactgctcagtacattcaggttgagttactac
tctatcttgaatttaatgagccgtgctgagggccaatttacagctgagcatgttatcaag
aactcatttcatcagtttcagtatgagaaggctttacctgatattggggataaggtttca
aaactcgaaaaagaagctgagatgcttgatgcttccggggaggcggaagttgctgaatat
cataagctaagacttgatattgctctgcttgagaggaagatgatgtcagaaataacccga
cctgaaagagttctcttttttcttcttcctggcaggctggttaaggtacaagatggtgca
actgattggggttggggagtggtggttaatgtggtgaaaaagccctcatcagcgtcgaac
actttgccagcgtcttcttcacgtggtagtgattacatagtggatacgttgctccattgt
tctcctggatcaagtgaaaatgggactcgctccaaaccatccccacctcgtcccggggag
aggggtgaaatgcacgtggttcctgttcagatgccactcatttctgctcttagcaaaatc
agaatatctgttccttctgacctccgaccactggaagcgaggcaaagtatattgctggca
gtgcaggagttgggaactaggtttcctcaaggtcttccgaagctcaaccctgtgaaggat
atggccatcgaggaccacgaatttgttgatgtgatgagtcaaattgaggaacttgagaag
aaattacatgatcatccagtacataagtcttctcaaaataaggagcaagccaaatgtttc
caacggaaagcagaggtgaatcatgagattcaacaactaaaatcgaagatgcgcgactcc
cagcttcaaaaattccgcgacgagctgaaaaaccgatctcgggtcttaaaaaagcttggc
catattgatgccgatggtgttgtgcagttgaagggacgtgctgcttgtctgatagacaca
ggagatgaacttcttattactgaattgatgttcaatggtacgtttaatgatcttgatccc
catcaagttgcagctcttgcgagctgttttgttcccggagatcgatcaaatgaacaaata
catttaagaaccgaacttgggaagccattacagcaactccaagacagtgcgagaagaatc
gcagagatacaacgagagtgtaaactggaagtagatgtcgaggaatacgtggaatcaaca
gcaagaccatatatgatggatgtgatctactgttggtcaaagggtgcaacctttgctgag
gttatagaaatgacggatatctttgagggaagtatcattcggcttgctagaagacttgac
gagtttttgaatcagttgaaagctgctgctaaagctgtgggagaggttgatctggaggcg
aagttcggtgctagcagtgagagcttacggcgaggtattatgtttgcaaactccctttac
ttgtag
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