Paenibacillus sonchi: JI735_21710
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Entry
JI735_21710 CDS
T07264
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
pson
Paenibacillus sonchi
Pathway
pson03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pson00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
JI735_21710
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pson03019
]
JI735_21710
03009 Ribosome biogenesis [BR:
pson03009
]
JI735_21710
Enzymes [BR:
pson01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
JI735_21710
Messenger RNA biogenesis [BR:
pson03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
JI735_21710
Ribosome biogenesis [BR:
pson03009
]
Prokaryotic type
rRNA helicases
JI735_21710
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_22
CMS1
AAA_19
AAA_30
Helicase_RecD
Motif
Other DBs
NCBI-ProteinID:
QQZ59286
UniProt:
A0A974P9B4
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All DBs
Position
4899402..4901039
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AA seq
545 aa
AA seq
DB search
MKTFAEFGLEPKVLQAITELGFEEATPIQEQAIPIALTGSDLIGQAQTGTGKTAAFGIPL
ISKIAREEEKILALVMTPTRELAIQVAEEIGKLTRFKGLRSLAIYGGQDIGRQIRGLKKR
PQIIIGTPGRLLDHINRKTIRLDDVQTIVLDEADEMLDMGFMEDIQTILKLVPEERQTML
FSATMPPNIQRLAQQFLKNPQHVSVIPKQISAPLIDQAYIEVPERQKFEALSRLIDMESP
DLAIVFGRTKRRVDELAEGLQKRGYSADGLHGDLSQNQRDAVMRKFRDGSIDVLVATDVA
ARGLDVSGVTHVINFDLPQDPESYVHRIGRTGRAGKEGTAWSFVTPREMDHLHLIERVTR
HRITRKPLPTMAEAIEGKQRITAERLLAMVEGGGELNEYKGIAIQLLEQYDSVQLLTAAM
KLLTGDTKDAQVELTPEDPIRVKRRGGKNDIRSGRKPNGGYGGNRTGSGSGGGYRGNRDN
ASGGSRGGYSSGYGSGSGGYGGGYKGNRDSGAGRDGGAGRSGDRKPYTRPSSTSTRPAKR
DDYDI
NT seq
1638 nt
NT seq
+upstream
nt +downstream
nt
ttgaaaacattcgcagaattcggcctggagccaaaagtgcttcaagcaatcacagagctt
ggatttgaggaagcaacacccattcaggagcaggcgattccgattgcgttgaccggatcg
gatcttatcggccaggcgcagaccggtacaggtaaaaccgctgctttcgggattcccctc
atctccaaaatcgcccgggaagaagagaaaatccttgcacttgtcatgacgccgacacgt
gagcttgcgattcaggtagctgaggaaatcggcaaattgacccgcttcaaaggactccgc
tccctggccatttacggcgggcaggatatcggccgccagatccgcggcctgaagaagaga
ccgcagatcatcatcggtacacctggacggcttctggaccacattaaccgcaaaaccatc
cgcctcgatgatgtccagaccattgtgctggacgaagctgacgaaatgctggatatgggc
ttcatggaagacatccagacgattctcaagcttgtaccggaagaacgccagaccatgctg
ttctcagctacaatgcctcctaacattcaacgtcttgcccagcagttcctgaagaatccg
cagcatgtttccgtaatcccgaaacaaatcagcgcacctctgattgaccaggcttatatt
gaggttcctgagcgccagaagttcgaagctctgagccgcctgattgacatggaatcccct
gatttggcgatcgtattcggccgcaccaaacgccgggttgacgagctggctgaaggattg
caaaaacgcggttattccgcagacgggctgcatggcgacttgtcccagaatcagcgggat
gccgtaatgcgcaaattccgtgacggcagcatagatgtgcttgttgctacagacgttgca
gcccgcggactcgacgtttccggtgtaactcatgttatcaactttgacctgccgcaggat
cctgagagctatgtacaccgtatcggccgtacaggccgtgccggcaaggaagggactgcc
tggtctttcgtgaccccgcgcgagatggatcacctgcatctgattgaacgtgttacgcgt
caccgtattacccgcaaaccgctgccgacaatggctgaggctatcgaaggcaagcagcgc
attactgctgaacgtttgctggcaatggttgaaggcggcggcgagctgaacgaatacaaa
ggcatcgccattcagcttctggagcaatatgattcagttcaactgctgacagcggctatg
aagctgcttaccggcgacaccaaggatgcccaggttgaattgacaccggaagatccgatc
cgtgtcaaacgccgtggcggcaagaatgacatccgcagcggacgcaagccgaacggcgga
tatggcggcaaccgcacaggttccggaagcggcggcggataccgtggcaaccgtgataat
gcgagcggcggcagccgtggcggttacagcagtggatacggcagcggcagcggcggatat
ggcggcggctacaaaggcaaccgtgattccggtgcaggccgtgatggcggtgctggacgc
agcggggaccgcaaaccctacacacgtccaagcagcacaagcacacgtccggctaagcgc
gatgattacgatatctaa
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