Paenibacillus sonchi: JI735_28175
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Entry
JI735_28175 CDS
T07264
Symbol
topA
Name
(GenBank) type I DNA topoisomerase
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
pson
Paenibacillus sonchi
Brite
KEGG Orthology (KO) [BR:
pson00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pson03032
]
JI735_28175 (topA)
03400 DNA repair and recombination proteins [BR:
pson03400
]
JI735_28175 (topA)
Enzymes [BR:
pson01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
JI735_28175 (topA)
DNA replication proteins [BR:
pson03032
]
Prokaryotic type
DNA Topoisomerases
JI735_28175 (topA)
DNA repair and recombination proteins [BR:
pson03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
JI735_28175 (topA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Zn_ribbon_Top1
Toprim
Toprim_4
Zn_ribbon_RPB9
Toprim_3
Lar_restr_allev
DinB
Motif
Other DBs
NCBI-ProteinID:
QQZ60349
UniProt:
A0A974PAB3
LinkDB
All DBs
Position
complement(6285797..6287893)
Genome browser
AA seq
698 aa
AA seq
DB search
MADALVIVESPAKAKTIGKYLGSKYIVKASMGHIRDLPKSQIGVEVENDFSPKYITIRGK
GSILKELKDASKKVKKVYLAADPDREGEAIAWHLAHALDLDNSEECRVVFNEITKQAVKD
AFKTPRKINMDLVNAQQARRILDRLVGYKISPLLWKKVKKGLSAGRVQSVAVKIIMDREN
EISAFVPTEYWSITAKLGIRDALFEAKFHKLNGEKKELGNENDVKEVLEAIKDAAFKVSE
VKEKERQRHPSAPFTTSSLQQEAARKLGFRAAKTMSVAQQLYEGVELGKEGTVGLITYMR
TDSTRLSATAQEEAKELILAKYGEKFVPESPRQYSKKAAGAQDAHEAIRPTSALREPEMV
KEFMSRDQFRLYKLIWERFVSSQMSSAVLDTLSVDITAGTAVFRAVGSKVSFPGFMKVYV
EGNDDGTTDEEKFLPPLQAGDDLMKQEIEPKQHFTQPPPRYTEARLVKTLEELGIGRPST
YAPTLETIQKRGYVAIEEKKFMPTELGELIIEQMEQFFPEILDVEFTAHMEDDLDHVEDG
EEDWVKVLAEFYTSFEKRLVFAEEEMKEIEIEDEVSDEMCEKCGKPMVYKLGRFGKFLAC
SGFPDCRNTKPIVKDIGVSCPKCHEGKVVERRSKKGRVFYGCDQYPGCDFVSWDRPSVKP
CPVCGSWMIEKRSKQGTKLQCTSCDHTEAVLEGEELAE
NT seq
2097 nt
NT seq
+upstream
nt +downstream
nt
atggcggatgcgctggttattgtcgaatcgccggcaaaagcgaagacaattggcaaatat
ttaggcagtaaatatatcgtaaaggcttcaatggggcatatcagagatttgccgaaaagt
cagatcggggtagaagtagaaaatgattttagtcccaagtatattacgatccgcggcaag
ggctctattctgaaagagctcaaagacgccagcaaaaaagtgaaaaaagtctatctggcg
gctgacccggaccgcgaaggtgaagcgattgcctggcatctggcacatgcgctggatctg
gacaactcagaggaatgccgggtcgtttttaatgagataacgaagcaggcagtgaaggat
gccttcaagaccccgcggaagattaatatggatctggtgaacgcgcagcaggcccggcgg
attctggatcgcctggtcggctacaagatcagcccgctattatggaagaaagtcaaaaaa
ggtttgtcagccggccgtgtgcagtctgtggccgtgaagattatcatggaccgcgagaat
gaaatttcggcttttgttccaacggaatattggagcattactgcaaagctgggcatccgg
gatgcactgttcgaggctaagttccacaagctgaacggcgagaagaaagaactcggaaat
gaaaatgatgttaaagaagtgctggaagccattaaagatgctgccttcaaggtgagtgaa
gtcaaagagaaggaaagacagcgccatccttcggctcccttcacaaccagctccctgcag
caggaggcagcacgcaagctgggcttccgtgccgccaaaaccatgtctgtcgcacagcag
ctctatgagggtgttgagctgggcaaagagggaactgtgggtttgatcacttatatgcgt
actgactccacccggctgtccgcgactgcgcaggaagaagccaaggaactgattctggcg
aaatacggtgagaagtttgtgcccgagtcgccccgccagtattccaagaaggccgccgga
gcccaggatgcgcatgaagccatccgtcctacctccgcacttcgtgaacctgagatggtc
aaagaattcatgagccgtgaccaattccggctgtataaactgatctgggaacggttcgta
tccagccagatgtcttcagcagttcttgatacgctctcggtagatatcactgcaggcaca
gctgtcttcagagccgtgggttccaaggtttcttttccgggctttatgaaggtttatgtt
gaaggcaatgatgacggcacaacggatgaagaaaagttcctgccgccgctccaggcgggc
gatgacctgatgaagcaggaaattgagccgaagcagcatttcacgcagccgcctccgcgc
tatactgaggcacgtctggtgaagacgctggaagagctcggcataggccgtccgagtacg
tatgccccgacactcgaaaccatccagaaacgcgggtatgtggccattgaagaaaagaaa
tttatgccgaccgagcttggagagctgatcattgagcagatggagcagtttttcccggag
attctggatgtagaatttacagcgcacatggaagatgatctggaccatgtggaggatggc
gaagaagattgggtgaaggtattggccgaattttatacttcctttgagaagcggctggtc
tttgctgaagaagaaatgaaagaaatcgaaattgaagatgaagtttcggatgaaatgtgc
gagaaatgcggcaagcctatggtatataagctgggaaggttcggtaaattcctggcatgc
tccggttttcccgattgccggaataccaagccgattgtcaaggatattggcgtgagctgc
ccgaaatgccatgaaggcaaggttgtggagcgccgcagcaagaaaggccgtgtcttctac
ggatgtgaccagtatcccggctgtgattttgtatcatgggacagaccatccgtcaaacca
tgtccggtctgcggctcctggatgatagagaagcgcagcaagcagggaacgaagctgcag
tgcacctcttgcgatcacacggaggcagtgcttgagggcgaagaactggcagaataa
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