Paenibacillus sophorae: KP014_01305
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Entry
KP014_01305 CDS
T07500
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
psop
Paenibacillus sophorae
Pathway
psop03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
psop00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
KP014_01305
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
psop03019
]
KP014_01305
03009 Ribosome biogenesis [BR:
psop03009
]
KP014_01305
Enzymes [BR:
psop01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
KP014_01305
Messenger RNA biogenesis [BR:
psop03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
KP014_01305
Ribosome biogenesis [BR:
psop03009
]
Prokaryotic type
rRNA helicases
KP014_01305
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
QWU15949
UniProt:
A0ABX8HCW3
LinkDB
All DBs
Position
complement(288246..289784)
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AA seq
512 aa
AA seq
DB search
MKLPGFKELGVSEALTALLKGNGIAQPTPVQAEAIPPLVQGLDVIARAKTGTGKTLAFLL
PILDKIRPDRPFPQALIMAPTRELALQITEEARKLTHQSDIKILAVYGGQDVEKQLRKLE
GGRHLIIGTPGRLLDHMRRETLALGGVNMLVLDEADQMLHMGFLDEVESIITAIPSRRQT
MLFSATMPDPIKQLAASYMKQPIDIVIKSGSPIPLDNIRQQVVECTDRAKEEALKALIEW
DRPYLAIIFCRTKRRVSKLSDALREAGYDCDELHGDLSQNKREAVMKTFREAKLQLLVAT
DVAARGLDVEGVTHVFNYDMPLDVDSYIHRIGRTGRAGGKGLAITFASPRDRAGLEMIER
GISQRLERRRYEKGEFGEAKFVTGTGGGARAGGAREASRTGRGPFAGGARTSGRGKDAGG
RSRDAERGRRSRQDGAAPDKRAAHGGRGPSQGKPSSGGGPSQGRPSHGGGQARSGGRNGG
AGTAASGHGGRGGSGRNARSGEAGRKGGSRGR
NT seq
1539 nt
NT seq
+upstream
nt +downstream
nt
atgaaattgccgggttttaaagaattgggagtttcagaggcgctgactgcgcttcttaag
gggaatggcattgcacagcctacccctgtacaggcagaagcgattccgccgctcgtgcag
ggtctggatgtcatagcaagagcaaagacgggcacgggcaagacgctggcttttctgctg
ccgatattggataaaatcaggccggaccgtccctttccgcaggctctgattatggcgccg
acacgggagctggcgctccagattacggaggaagcgcggaagcttacgcatcagagcgat
atcaagatccttgcggtgtatggcggacaggacgtggagaagcagctgcgcaagctggaa
ggcggcaggcatctcattatcggcacgccgggcaggctgctggaccatatgcgccgcgag
acactggctttgggcggagtaaatatgctggtgctcgacgaagcggatcagatgctgcat
atgggctttctggacgaggtggagagcattattacggcgatcccttcgcggaggcagacg
atgctgttctcggcgaccatgccggacccgatcaagcagcttgcggccagctatatgaaa
cagccgatcgacattgtgatcaagagcggttcgccgattccgctggacaatatccgccag
caggtcgtcgaatgtaccgaccgtgccaaggaagaggcgcttaaggcgctgatcgaatgg
gaccggccgtatttggccattatcttctgccggacgaagcgccgggtgtcgaagctgagc
gacgctctgcgggaagcgggatatgactgcgacgagctgcacggcgacctgtcgcagaac
aagcgggaggcggtcatgaagacgttccgggaggcgaagcttcagcttctcgtcgctacg
gacgtcgctgcccgcggtctggacgttgaaggcgtaacccatgtcttcaactacgatatg
ccgctggacgtggacagctacatccaccgtatcggccggaccggaagggcgggaggcaag
gggctcgcgatcaccttcgcctctccgcgcgaccgcgccgggcttgagatgatcgagcgc
ggcatttcgcagcggctggaacgccgccgctatgagaagggcgaattcggcgaggccaaa
ttcgtcacgggcacgggcggcggcgcccgcgcgggcggagctcgcgaggcctcgcggacc
gggcgcgggccgttcgctggcggcgcgcggacgagcggccgcggcaaggacgcgggcggc
cggagccgggacgccgagcggggacggcggagccgccaggatggcgcggcgccggacaaa
cgcgccgcgcatggcggacgcgggccgtcgcagggcaagccgtcctctggcggcgggccg
tcgcagggcagaccatcgcatggcggcggacaggcccgcagcggcggcaggaacggcgga
gccggcacagccgcctccggtcatggcggccgggggggcagcggacggaatgcgcgaagc
ggtgaggcaggccgcaaaggcggcagccgcggcagataa
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