Paenibacillus sophorae: KP014_13560
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Entry
KP014_13560 CDS
T07500
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
psop
Paenibacillus sophorae
Pathway
psop03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
psop00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
KP014_13560
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
psop03019
]
KP014_13560
03009 Ribosome biogenesis [BR:
psop03009
]
KP014_13560
Enzymes [BR:
psop01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
KP014_13560
Messenger RNA biogenesis [BR:
psop03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
KP014_13560
Ribosome biogenesis [BR:
psop03009
]
Prokaryotic type
rRNA helicases
KP014_13560
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CA109-like
AAA_22
CMS1
Motif
Other DBs
NCBI-ProteinID:
QWU18059
LinkDB
All DBs
Position
2895402..2897033
Genome browser
AA seq
543 aa
AA seq
DB search
MNNLKTFAEFDLDPKVLQAITELGFEEATPIQSQSIPIAMTGSDLIGQAQTGTGKTAAFG
IPLITKIPREEEKIVALIMTPTRELAIQVAEEIGKLSRFKGIRSLPIYGGQDIGRQIRGL
KKKPQVIIGTPGRLLDHINRKTIRLDDVQTVVLDEADEMLDMGFMEDIQSILKLVPEERQ
TMLFSATMPPNIQRLAQQFLKNPEHVSVIPKQVSAPLIDQAYIEVPERQKFEALSRLIDM
ESPDLAIVFGRTKRRVDELSEALQKRGYSADGLHGDLSQNQRDAVMRKFRDGSIDVLVAT
DVAARGLDVSGVTHVINFDLPQDPESYVHRIGRTGRAGKEGSAWSFVTPREIDHLRLIER
VTRHRITRKPLPTMAEAIEGKQRVAAERLMDTMENGELNEYKGIAIQLLEQYDSVQLLSA
AMQLLTGEKKDSEIQLTPEEPIRVKRRGGKNDIRSGRKPSGYGGNRGGYGGGGGGYRGNR
EGGGNRGGYNSGGASGGASGGGYKGSREGSSREGSNYRGGERKFQRPADGERRTPKREDS
FDI
NT seq
1632 nt
NT seq
+upstream
nt +downstream
nt
atgaataatttgaaaacatttgcagaattcgacttggatccgaaagtgttgcaagccatc
acagaactgggattcgaggaggcaactccgattcaatcccagtctatcccaatcgctatg
acagggagtgacttgatcggacaagctcaaaccggtaccgggaaaacggcagcttttgga
atccctcttatcactaagatcccccgtgaggaagaaaaaatcgtggcgctgatcatgacg
ccgacccgtgaacttgccattcaggtagcagaagaaatcggcaagcttagtcgtttcaag
ggaatccgttccctgccaatctatggtggtcaggacatcggccgccaaatccgcggtctg
aagaagaaaccgcaggtcattatcggtacgccgggacgtctgcttgaccacatcaaccgc
aagacgatccgtctggacgacgtgcagaccgttgtactggatgaagcggatgaaatgctg
gatatgggcttcatggaagatatccagtccatcctgaagctggttccggaagaacggcag
acgatgctgttctcggcaacaatgcctccgaacatccagcgccttgctcagcagttcctt
aagaaccctgagcatgtctccgtcattccgaagcaggtcagcgcaccgcttatcgatcag
gcgtatattgaagttccggaacgccagaagttcgaagcactaagccgtttgatcgatatg
gaatctccggatcttgcgattgtgttcggacgcacgaagcgcagggttgacgaattgtct
gaagcgttgcaaaaacgcggttactctgcggacggcctgcacggcgacctgtctcagaat
cagcgcgacgccgtgatgcgcaaattccgcgacggcagcatcgacgtgctggttgcaacc
gacgtggcggcccgcggccttgacgtttccggcgtaacgcatgtcatcaactttgacctg
ccgcaggacccggaaagctatgtacaccgtattggacgtactggacgcgcaggcaaggaa
ggctccgcttggtcgtttgtgactccgcgtgaaatcgaccatctccgccttatcgagcgt
gtgacccgtcaccggattactcgtaagccgctgcctacgatggctgaagcgatcgaaggc
aagcagcgcgttgcagccgaacggctgatggatacgatggagaatggcgaactgaacgag
tacaagggcattgcgatccaactgctcgaacagtatgattccgttcaactgctgtccgca
gcgatgcagcttcttaccggggagaagaaggattccgaaatccagctgacaccggaagag
ccgatccgcgtcaaacgccggggcggcaagaatgacatccgcagcggccgtaagcctagc
ggctatggcggcaaccgtggcggctatggcggcggcggtggaggataccgtggcaaccgc
gagggcggcggcaaccgtggcggatataacagcggcggcgctagtggcggcgctagtggc
ggcggatacaaaggaagccgtgagggaagcagccgtgaaggttcaaattatcgcggtgga
gaacgcaaattccagcgtccggccgacggtgaacgccgcacgccgaagcgtgaggactct
tttgatatttaa
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