Paenibacillus sophorae: KP014_19915
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Entry
KP014_19915 CDS
T07500
Symbol
topA
Name
(GenBank) type I DNA topoisomerase
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
psop
Paenibacillus sophorae
Brite
KEGG Orthology (KO) [BR:
psop00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
psop03032
]
KP014_19915 (topA)
03400 DNA repair and recombination proteins [BR:
psop03400
]
KP014_19915 (topA)
Enzymes [BR:
psop01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
KP014_19915 (topA)
DNA replication proteins [BR:
psop03032
]
Prokaryotic type
DNA Topoisomerases
KP014_19915 (topA)
DNA repair and recombination proteins [BR:
psop03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
KP014_19915 (topA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Zn_ribbon_Top1
Toprim
Toprim_4
Zn_ribbon_RPB9
Auto_anti-p27
Toprim_3
DUF7340
Toprim_2
Motif
Other DBs
NCBI-ProteinID:
QWU14182
LinkDB
All DBs
Position
complement(4225947..4228046)
Genome browser
AA seq
699 aa
AA seq
DB search
MADSLVIVESPAKAKTIGKYLGSKYIVKASMGHVRDLPKSQIGVEVENDFNPKYITIRGK
GSVLKELKDASKKVKKVYLAADPDREGEAIAWHLAHALELDNTQDCRVVFNEITKQAVKD
AFKTPRKINMDLVNAQQARRILDRLVGYKISPLLWKKVKKGLSAGRVQSVAVKIIMDREN
EISAFVPEEYWTITAKLGIRDSVFDARFYKINGEKKELGRESDVQEVMKAIEGADFIVSE
VKEKERQRHPSAPFTTSSLQQEAARKLGFRAAKTMSVAQQLYEGVELGKEGTVGLITYMR
TDSTRISATAQEEAKELISGKYGEDFLPETPRQYSKKAAGAQDAHEAIRPTSALREPDAV
KEFTSRDQFRLYKLIWERFVSSQMASARLDTLSVDITAGEVVFRAVGSKVSFPGFMKVYV
EGNDDGTTEEEKYLPQLEAGDKLISQVIEPKQHFTQPPPRYTEARLVKTLEELGIGRPST
YAPTLETIQKRGYVAIEEKKFMPTELGELVIEQMEQFFPEILDVEFTAHMEGDLDHVEEG
AEDWVKVLAEFYNSFEKRLEVAEEEMKEIEIVDEVSDEICEKCGKPLVYKLGRFGKFLAC
SGFPDCRNTKPIIKDIGVGCPKCHEGKVVERRSKKGRVFYGCDRYPECDFVSWDKPSSKP
CPECGSWMVEKRNKQGARLQCTSCDHTEAIEDSDEETAE
NT seq
2100 nt
NT seq
+upstream
nt +downstream
nt
gtggctgattctttggtcattgtcgagtcgcctgcaaaggcgaagaccatcggcaaatat
ttgggcagcaaatatatcgtaaaggcatcaatgggacatgttcgcgacttgcccaaaagc
cagattggagtagaagtcgagaatgactttaatcccaaatatattacgattcgcggcaaa
ggctcggtgctcaaagagctgaaagacgcaagcaaaaaagtaaagaaagtctatctggca
gctgacccggatcgcgaaggagaggcgattgcctggcatctggcgcatgcgcttgaactg
gacaatacgcaggactgtcgcgtcgtgttcaacgaaattacgaagcaggctgtgaaggat
gctttcaagaccccgcgtaaaattaatatggatctggtcaacgcccagcaggcgcggcgc
attcttgaccggctcgttggttataaaatcagccctttattatggaagaaagtcaaaaag
gggctgtccgccggacgtgtgcagtcggtagccgttaaaatcattatggaccgggagaat
gagatctcggcattcgtgccggaggaatactggacgattaccgccaaacttggtatccgt
gattccgtattcgacgccagattctacaaaataaatggcgagaaaaaggaactggggcgc
gagagcgacgtacaggaagtaatgaaggcgattgaaggcgctgatttcatcgtcagcgaa
gtgaaggaaaaggaaagacagcgtcatccgtcagctccattcacaaccagttccctccag
caggaggcggctcgcaagctcggattccgggctgcgaagacgatgtcggtcgcccagcag
ctgtatgaaggtgtagagctcggaaaagaaggaaccgttggtcttatcacgtacatgcgt
acagactccacgcggatttcagcgactgcgcaggaagaagcaaaagagctgatctccggc
aaatacggggaggattttctgccggaaacgccgcgtcaatactctaaaaaggctgccgga
gcacaggacgcgcatgaagcgatccgcccaacctcggcgctgcgtgaaccggacgctgtg
aaagaatttaccagccgcgaccagttccggctttacaagctgatatgggaacgctttgta
tccagtcaaatggcttcggcccggcttgatacgctgtctgtcgatattacggccggcgaa
gttgtgttccgtgccgtcggttcgaaggtgtcttttccaggctttatgaaggtgtatgta
gaaggtaacgatgacggcacaacggaagaggaaaagtacctgcctcagctggaggccgga
gataagctgatttcgcaggtaatcgagccgaaacagcattttactcagccgcccccccgt
tatacggaagcgcgtctcgttaagacgctggaggaactgggaatcggacgcccaagcacc
tatgctccgacgctggagacgattcagaagcgcggctatgtcgccattgaagagaaaaaa
ttcatgcccaccgagctaggggaactggttatcgaacaaatggagcagttcttcccggaa
atccttgatgtagaatttacggcgcatatggaaggcgatcttgaccatgtggaagaaggc
gcggaagactgggtaaaggtgcttgccgaattttacaattccttcgagaagcgtcttgaa
gtggccgaagaggaaatgaaagagatcgagatcgtggatgaggtttccgacgaaatttgt
gagaaatgcggcaagccgctcgtttacaagttgggtcgttttggcaaatttttagcctgt
tcgggcttccccgactgcaggaatacaaaacctattatcaaggatatcggggtaggctgc
ccgaaatgccacgaaggaaaagttgttgaacgccgtagcaagaagggacgcgtcttctac
ggctgcgaccggtatcccgagtgcgactttgtctcctgggataaaccgtcttccaaaccg
tgcccggagtgcggctcgtggatggtcgagaaacggaataaacaaggagcccgtctacag
tgtacgtcatgcgaccataccgaggctatagaggacagcgacgaggaaacggcggaataa
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