Paenibacillus sophorae: KP014_24325
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Entry
KP014_24325 CDS
T07500
Symbol
addB
Name
(GenBank) helicase-exonuclease AddAB subunit AddB
KO
K16899
ATP-dependent helicase/nuclease subunit B [EC:
5.6.2.4
3.1.-.-]
Organism
psop
Paenibacillus sophorae
Brite
KEGG Orthology (KO) [BR:
psop00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
psop03400
]
KP014_24325 (addB)
Enzymes [BR:
psop01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
KP014_24325 (addB)
DNA repair and recombination proteins [BR:
psop03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
AddAB pathway proteins
KP014_24325 (addB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ADDB_N
PDDEXK_1
UvrD_C
Motif
Other DBs
NCBI-ProteinID:
QWU14998
LinkDB
All DBs
Position
complement(5003373..5006876)
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AA seq
1167 aa
AA seq
DB search
MPVTFLIGRSGSGKTTKIWNSICATLREDPLGAPIIQLVPEQGSFSAEQGLLSACDNRGS
LRAQTLSFPRLSYRVKQETGGRGGVPIGDEGKKMLLYKILSRRKEELKLFGASSDRPGFV
DRLSRLHSELKRCCLTTSNLEEQLSRIRESAVGSPILTGKLEDLNIVFTDLEQAMSDLYI
DEEDRLAELSELIPSSSFVCGSSIFVDGFRGFTAREFTVLRQLMLHAADMTIALTLDRPF
LGGHRPHELELFHPSASAYMKLRGMAEELGLDVRDEVLAPAVLPRFEGAPALAHLERGFD
RRLPYRGPKPAEDEITIRAAANKRAEMEGALREMRRLAREEGAKYGEMAVFVRKLEDYDY
LVPALFRDYGVPFFLDRKAGELHHPLVEFIRSALDIVRRRWRYEDVFRCVKTGFLLPLDG
SLTRDHMDTLENYILACGIQGYRWTDEKYKWKAIPSLSLEGGGKTDARLVPLMERCRKAI
TAPLKAFEQRIKKSRSGFDLCKSVFGLLEDSAAARKLEYMSAAALEEGKTQDAREHRQLW
GAVLDLLDQIVEMMGEETLSVDMFAGILETGLAELRMGLVPPALDQVLVGTMDRTRVSGV
KYAFLLGFNEGVVPALFQEDGVLSETERSLLEGAGMELAPGSSRQMLDERFLIYDALTSA
SRKLWVSYACTDDDGKGLLPSEMIRHLRRMYPSLAEIPLQSLPVSAPPEEHHDFIGHPEQ
TLRMLIVQLRQWKQGQDIPQIWWEVYNWFAENGVWGPRLQTLISSLFYRNPGMPLRRETS
LRLYGGSTLRGSVSRMEKFVSCPFSHFASYGLRLKERQLYKLQAPDIGQLFHAALSTMAS
KLQSEGRSWGALTPEECRKEAGDTVDMLAPMLQGEILKSSKRYGYIARKLKNIVGRASVI
LGEHSRRGSFDTAFLELDFGPGKPLPPLRIELPNGCLMEVVGRIDRVDTAEGENGILLRV
IDYKSSRKDLKLHEVYYGLSLQMLTYLDVLLTYAEEWLGEPAFPAGTLYFHVHDPLLSSP
NGMNREQAQQELLKRFKMKGLLMADREVVSLMDTSLDKGHSSIVPVALKSDGSFYSSASV
ATPEQWDRLLSSVRGTITEIGTRITEGDVAITPYRIQQETACTFCSYRAVCQFDEAVEGN
GYKHLGKPGKDAIWEMLSRKDEGGNRP
NT seq
3504 nt
NT seq
+upstream
nt +downstream
nt
atgccggtgacgtttttgatcggccgttcgggcagcggtaaaacgacgaaaatatggaac
tcgatctgtgcgactttgcgtgaggatcccttgggtgctccgatcattcaactggtcccg
gagcagggctcctttagcgccgagcaggggctgcttagcgcctgtgacaatcggggcagc
ctgcgcgcgcagacgctcagctttccgcgtctctcgtaccgggtgaagcaggagaccggc
ggaagaggcggcgtgccgatcggcgatgaaggcaagaagatgctgctttacaaaattttg
agccggcgcaaggaagaattgaaattgttcggcgcttcgtcggaccgtcccggctttgtg
gaccggttgagccggctgcattccgagctgaagcgatgctgccttacaacctccaatctg
gaggaacagctgtcccggatacgggagtcagcggtcggcagtccgatccttaccggcaag
ctggaagacttgaatatcgtattcaccgatctggagcaggccatgtccgatctgtatatt
gacgaggaagaccggctggccgagctttcggagctgatcccctcttcttctttcgtttgc
ggttcctctattttcgtggacggcttccgggggtttacggcccgcgaatttacagtgctg
cgccaactgatgctgcatgccgccgacatgacaatcgcgctgacgctcgaccggcccttt
ctcggcgggcaccggccgcatgagctggagctgtttcatccttcggcctccgcttacatg
aagctgagggggatggcggaagagcttggccttgatgtcagggacgaagtgctggcgccc
gcggtgctgccgcgctttgaaggtgcgcccgctttggcgcatttggagcgcggctttgac
cgccggctgccataccggggaccgaagccagcggaagatgagataacgatccgggcggcc
gcgaacaagcgcgcggaaatggaaggcgcgctgcgggagatgcggagacttgcgcgcgaa
gaaggagcgaagtatggcgaaatggctgtattcgtccgcaagttggaggattacgattat
cttgtgccggcccttttccgggattacggcgtaccgttcttccttgaccgcaaggcggga
gagcttcaccatccgctagtggagtttatccgttcggcgctggacatcgtccgccgccgc
tggcggtatgaggatgtgttccgctgcgtgaagacgggctttctgcttccattggacggc
agcttgaccagggaccatatggacactctggagaactatatccttgcctgcggcattcaa
ggatatcgctggaccgatgagaaatacaaatggaaggcgatcccaagcctgtcgctggaa
ggcggaggaaagaccgacgcccggctggtgccgctgatggaaagatgccggaaggcgata
actgcgccactgaaagctttcgaacagcgaattaagaagagccgcagcggatttgatctg
tgtaagtcggtattcgggctgctggaagacagtgccgccgcgcgcaagctggaatacatg
agcgccgcagcgctggaagaagggaaaactcaggatgcccgggaacaccggcagctgtgg
ggcgccgtccttgatctgctggatcagatcgtggagatgatgggcgaggagactttgagc
gtcgacatgttcgctggaattttggagacggggcttgccgagctgcggatgggccttgtt
cctccggcgcttgatcaggtgcttgtcggaacgatggaccggacgcgggtctcgggagtc
aagtacgcttttttactcggcttcaacgaaggggtcgtaccggcgctgtttcaggaagac
ggcgtgctgtccgagacggaacgttcccttttggaaggagcgggcatggagcttgcgcct
ggatcttcccgccaaatgctggatgaacgctttctgatctatgatgctctgacttcggct
tcccgcaagctgtgggtcagctatgcatgtacggatgacgatggcaaaggcttgcttcct
tcggaaatgatccgccatttgcgcaggatgtatccgtcactggccgagatacctctgcag
agtcttccggtgtcggctccgcctgaggagcatcacgatttcatcggccatcccgagcag
actctgcgtatgctgatcgtacagctgcgccagtggaagcagggacaggatatcccgcag
atctggtgggaggtctataattggtttgcggagaacggggtatggggaccgcgtttgcag
accttgataagctcgctgttttaccgtaatcccggtatgccactccgaagagaaacaagt
ctcaggctgtacggcggctccacgctgcgcggaagcgtctcgcgaatggagaaattcgtc
tcctgtccgttctcccatttcgcctcttacggcctgcggctcaaggagcgccagctgtac
aagcttcaggctccggatatcgggcagctgtttcacgccgcgctgagtaccatggcgtcg
aagcttcagagcgagggacgaagctggggggctctgacacccgaagaatgccggaaggaa
gccggtgacacggtggacatgctggcgccaatgcttcagggagagatcctgaagagttcg
aagcgttatggatatattgcccgcaagcttaagaatattgtcgggcgggcttctgttatt
ctcggggagcattcgcgaaggggcagcttcgataccgcttttctcgagctggattttggt
ccgggcaagccgctgccgccactgcgcattgaactaccgaacggctgtttgatggaggtc
gtaggaaggatcgaccgcgttgataccgcagagggcgagaacggaatactgctaagggtc
atcgactataaatccagccgcaaggatcttaagcttcatgaagtgtattacggattgtcg
ctgcagatgctgacgtatctggatgtgctgctaacctatgccgaggagtggctaggggaa
cctgcgtttccggcgggaacgctgtattttcacgtccatgatccgctgctctcgtcgcca
aacggcatgaaccgggagcaggcgcagcaggaactgctgaagcggttcaagatgaagggg
ctgctcatggcggaccgtgaagtcgtctcgctcatggatacgagcctggacaagggacat
tcaagtatcgtgccggttgcgctgaagagcgacggcagcttttacagcagtgcttccgtc
gctacgcccgagcagtgggaccgtctgctgtcttccgtaagagggacgatcacggaaatc
ggaacccgcatcacggaaggggacgtagccatcacgccttaccggattcagcaggagacc
gcatgcacgttctgttcctatagagcggtgtgccagttcgacgaggccgtggaaggcaac
ggatacaagcatttaggcaagccgggcaaagacgcaatctgggagatgctgtcccgcaaa
gacgaaggaggaaacagaccgtga
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