Paraclostridium sordellii: RSJ16_00750
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Entry
RSJ16_00750 CDS
T05252
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
psor
Paraclostridium sordellii
Pathway
psor03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
psor00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
RSJ16_00750
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
psor03021
]
RSJ16_00750
03400 DNA repair and recombination proteins [BR:
psor03400
]
RSJ16_00750
Enzymes [BR:
psor01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
RSJ16_00750
Transcription machinery [BR:
psor03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
RSJ16_00750
DNA repair and recombination proteins [BR:
psor03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
RSJ16_00750
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Apocytochr_F_C
RPOC_hybrid
Motif
Other DBs
NCBI-ProteinID:
AUN12848
LinkDB
All DBs
Position
72545..76033
Genome browser
AA seq
1162 aa
AA seq
DB search
MFELNNFESIKIALASPEKIRQWSRGEVKKPETINYRTLKPEKDGLFCERIFGPQKDWEC
HCGKYRRVRYKGVVCDRCGVEVTKAKVRRERMGHIELAAPMSHIWYFKGIPSRMGLLLDM
SPRSLEKILYFASYVVTNPGETGLNEKQLLTEKEYRTAVEKYGYNTFEVGMGAEAVKKLL
QNIDLEQQSKELRADLKDSTGQKRVRTIRRLEVVEAFKKSGNKPEWMILDAIPVIPPDLR
PMVQLDGGRFATSDLNDLYRRVINRNNRLKRLLELGAPDIIVRNEKRMLQEAVDALIDNG
RRGRPVTGPGNRPLKSLSDMLKGKQGRFRQNLLGKRVDYSGRSVIVVGPELKFYQCGLPK
KMALELFKPFVMDRLVKEGYAHNIKSAKSIVEKVKPEVWDVLEDVIEGHPVMLNRAPTLH
RLGIQAFEPVLVEGKAIKLHPLVCTAYNADFDGDQMAVHVPLSVEAQAEARFLMLSVNNI
LAPKDGSPITTPSQDMVLGCYYLTIEAQEGAKGTGMIFKDYNEMMLAYENKAVTLHSLVK
VRRTVEGVGTQLVEATVGRFIFNENIPQDLGFVDRDKDKFALEVDFLADKKSLGKIIDKC
FRKHGNTVTAEMLDHIKSLGFKYSTRGGITVAVADMKIPEAKKAYLAEAEAKVDKYEKAY
RRGLISNEERYERVIETWTETTEKVTDALMANLDRLNNIFIMAHSGARGSKNQIRQLAGM
RGLMANASGKTVEIPVKSNFREGLSVLEYFTSSHGARKGLADTALRTADSGYLTRRLVDV
SQDVIVRDVDCGTTEDTEIFAIKDGNEVIEELYDRIVGRYTIDPIIHPETGEVIVEADSM
IQEDQAEKIIESKIDKVKIRTVLNCKTNHGVCSKCYGRNLATGKEVNIGEAVGIIAAQSI
GEPGTQLTMRTFHTGGVAGGDITQGLPRVEELFEARKPKGLATITEITGRVEIDETGKRK
EVTVVPEQGEAQVYAIPYGSRLRVKNGQFVEAGEALTQGSINPHDIVRVKGIEGVQDYVV
KEVQRVYRMQGVDINDKHIEVIVRQMLSKVKVEDPGDTDLLPGGYEDVLTFNQTNEEAVA
QGLRPASAKRVLLGITKASLATESFLSAASFQETTRVLTEAAIKGKEDHLIGLKENVIIG
KLIPAGTGMKRYKNIAVEKIEE
NT seq
3489 nt
NT seq
+upstream
nt +downstream
nt
ttgtttgaattaaacaatttcgagtcaataaaaatagcattggcttctccagaaaaaata
agacagtggtctagaggagaagtaaaaaagcctgaaacgataaattatcgtacgcttaag
ccagagaaagatggtcttttctgtgaaagaatatttggacctcagaaagactgggagtgt
cactgtggtaaatacagaagagtaagatacaaaggtgttgtttgtgatagatgtggagta
gaagtaactaaggcaaaggtaagaagagaaagaatgggacatatagagctagcagctcct
atgtctcatatctggtacttcaaaggtataccaagtagaatgggacttttacttgatatg
tctccaagatcattagagaaaattttatattttgcatcttatgtagtaactaatccaggt
gaaactggattaaatgaaaagcaattattaacagaaaaagaatacagaacagctgtagaa
aagtatggatataatacttttgaagttggaatgggtgctgaagctgttaagaaactttta
caaaatatagatttagagcaacaaagtaaagaattaagagctgacttaaaagacagtaca
ggtcaaaaaagagttagaactataagaagattagaagttgtagaagcatttaaaaaatct
ggaaataaaccagagtggatgatattagatgcaattcctgttataccaccagatttaaga
cctatggttcaattagacggtggaagatttgctacatctgacttaaatgacttatacaga
agagttataaatagaaataacagattaaagagattattagaacttggagcacctgatatc
atagtaagaaatgaaaaaagaatgcttcaagaagctgtagatgctttaattgacaatggt
agaagaggtagaccagtaacaggacctggtaatagaccattaaaatcattatcagatatg
cttaaaggtaagcaaggacgtttccgtcaaaacttacttggtaagcgtgttgactactca
ggacgttctgttatagttgttggaccagaacttaaattctatcaatgtggtcttccaaag
aaaatggctcttgaattattcaaaccatttgttatggatagattagttaaagaaggatat
gcacataatataaagagtgcaaaatctatagtagagaaagttaaaccagaagtatgggat
gtattagaagatgttatagaaggacatcctgtaatgcttaaccgtgcacctactctacat
agactaggtatacaagcatttgaaccagttttagttgaaggaaaagctataaagctacat
ccattagtatgtacagcatacaacgctgacttcgatggtgaccaaatggcggtacacgtt
ccgttatctgtagaagctcaagctgaagcaagattcttaatgttatctgtaaataatata
cttgctcctaaagacggttctcctataactactccatctcaggatatggttctaggatgt
tattacttaacgatagaagctcaagaaggtgctaaaggtactggaatgatctttaaagat
tacaatgaaatgatgcttgcttatgaaaataaagcagtaacattgcattctttagttaaa
gtaagaagaactgttgaaggtgttggaactcaattagttgaggcaactgttggtagattt
atattcaatgaaaatatacctcaagatttaggatttgttgatagagacaaagataagttt
gctttagaagtagatttcttagctgacaaaaaatctttagggaagataatagataaatgc
tttagaaagcatggaaacacagtaacagctgaaatgttagatcatataaaatctttagga
tttaaatattctacaagaggtggtataacagttgccgttgcggatatgaagataccagaa
gctaaaaaagcatacttagctgaagctgaagctaaagttgataagtatgaaaaggcatat
agaagaggtcttatatctaacgaggaaagatatgagagagtaatagaaacttggacagaa
actactgaaaaagttacagacgctcttatggctaacctagatagattaaataatatattc
ataatggctcactctggagccagaggttctaagaaccagataagacagttagcaggtatg
cgtggtctgatggccaatgcatcaggtaagacggttgaaataccagttaaatctaacttc
cgtgaaggtttatcagtacttgaatacttcacatcttcacatggagctagaaagggtctt
gccgatacagctctacgtacagctgactcaggatacttaacaagaagacttgttgatgtc
agtcaagatgttattgttagagatgtagactgtggaacaacagaagatacagaaatcttt
gcaataaaagatggaaatgaagtaatagaagagttatatgatagaatagttggaagatac
actattgatcctataattcacccagaaacaggagaagtaatcgttgaagctgattctatg
atacaagaagatcaagctgaaaagattattgaatctaaaatagacaaggttaagataaga
actgttcttaattgtaaaactaaccatggagtatgttctaagtgttatggtagaaactta
gctactggtaaagaagttaatataggagaagctgttggtataatagctgctcaatcaatc
ggtgaacctggtactcagcttacaatgcgtacattccatacaggtggggttgccggagga
gatataacacaaggtcttccaagggtagaggaattatttgaagctagaaagccaaaaggt
cttgctacaataactgaaataacaggtagagtagaaatagatgaaactggtaagagaaaa
gaagttactgtagttccagaacaaggtgaagcacaagtttatgctataccatatggttca
agattaagagtaaagaatggacaatttgttgaagctggagaggctttaactcaaggatca
ataaatcctcatgatatagtaagagttaaaggtattgaaggtgttcaagattatgttgtt
aaagaagttcaaagagtttatagaatgcaaggtgttgacatcaacgataaacacatagaa
gtaattgttagacaaatgctatctaaagttaaagttgaagatccaggtgatacagattta
ttaccaggaggatatgaagatgttcttacattcaaccaaactaatgaagaagctgtagct
caaggtttaagaccagcatcagctaagagagttttacttggaataactaaagcttctctt
gcaacagagtcattcttatcagctgcatcattccaggaaacaactagagtattaacagaa
gctgctataaaaggaaaagaagatcacttaataggtcttaaagagaatgttataataggt
aagttaataccagcaggaacaggaatgaagagatataaaaatatagctgttgagaaaata
gaagaataa
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