Paraclostridium sordellii: RSJ16_01300
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Entry
RSJ16_01300 CDS
T05252
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
psor
Paraclostridium sordellii
Pathway
psor03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
psor00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
RSJ16_01300
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
psor03400
]
RSJ16_01300
Enzymes [BR:
psor01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
RSJ16_01300
DNA repair and recombination proteins [BR:
psor03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
RSJ16_01300
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrB_inter
DEAD
TRCF
Helicase_C
CarD_TRCF_RID
ResIII
Cas3-like_C_2
UB2H
AAA_22
RecG_dom3_C
LtuB
DUF924
RuvB_N
Motif
Other DBs
NCBI-ProteinID:
AUN12934
LinkDB
All DBs
Position
170953..174348
Genome browser
AA seq
1131 aa
AA seq
DB search
MNDIFISPLQNSKEYKDVINNIENNKGTLLINGLVQSQKPNIVYSIFNDLKKQILYIANT
DLEAKKVYEDLCFYMKDKVDYLSSQDIYFYHLDAKDRNDEARKLKVLLRMISKENTVIVT
SVEAVLSKYVPKEVLKKNIFTYKIGDTIDIENISKKLVNLGYERVSKIEGFGQFSIRGGI
IDVFSLEYDTPIRIELFDDEIESIRTFDVFTQKSIKKIKKCTITPSREFIYPENTEESLT
RLEKDISKIADDDVYKSIENIKTKTYFEGVENYIDYMYTDENKSIFTYLKEDAVVFINDV
SRLKERCENYINEFKENYKLNLERGLALKQQGNLLYHYSDLEYLAQGKKLILNMLLTKSI
KDISVKSIVNFESREIPSFNGKLDILAEELTRLKYNGHKVVLATNTYDRAKKLNKELLNL
GIETVLSRKRDVEIYSSQVVIVVGNITSGFQYKSIKFDVITDKEMIGSNKRAKTSKSKKF
NKGQKIETFLDLNVGDYVVHENSGVGRYVGIDQLSVNGVKKDYMRVVYQGGDNLYVPIDQ
MDKIQKFIGADTEKVKLNKLGSSEWSKAKAKVKKEIEDMTKDLVELYAKREKIKGYRFSK
DTLWQSEFETLFPYQETDDQIKAIEETKKDMESNKVMDRLICGDVGYGKTEVAIRAIFKA
CMDQKQVAVLVPTTILAQQHYNTFRSRFENYPIRVEVLSRFKTPKEQKQIIEDARKGLVD
VIIGTHRIISKDIDLPNLGLVVIDEEQRFGVKHKESLKKIKSTVDVLTLSATPIPRTLHM
SLSGIRDMSVIEEPPQERYPVITYVVEGKESIIQDEIEREIARGGQVFFVYNRVERIDEM
ASMIQRLVPDAKIAVAHGRMTGKELENIIIGFLNKEYNVLVCTTIIETGMDISNANTMIV
YDADKMGLAQLYQLRGRVGRSNRQGYAYFMYEKDKVLSEIAEKRLKAIREFTEFGSGFKI
AMRDLEIRGAGNILGPQQHGHMAVIGYDLYVKMLNEAIRKVKGEVVQEEIDVEVDLPVNA
YIPDSYIDDEIIKIEMYKKIASIENESDMNDIKDELADRFSDIPKSVNALISIAYIKTLC
KQIGIEKIRMLKDEVILLPLTRYRTKEKNGYKIIDELQSILEQMCINKKNN
NT seq
3396 nt
NT seq
+upstream
nt +downstream
nt
atgaacgatatttttatatctcctttgcaaaattctaaagaatataaagacgtaataaac
aatatagaaaataataaaggtacattattaataaatgggctagtacaatcacaaaagccc
aatatagtgtactctatatttaacgatttaaagaaacagattctgtatattgcaaacacg
gatttagaagcaaaaaaagtatatgaagatttatgtttttatatgaaagataaagttgat
tacttaagttctcaagatatatacttttatcatttagatgcaaaggatagaaatgatgaa
gcaagaaaattaaaagtactattaaggatgataagcaaggagaatacagtaatagtaact
tctgtagaagctgttcttagtaaatatgtaccaaaagaggttttaaagaaaaacatattt
acatataaaattggagatacaatagatattgaaaatatatctaaaaaattagttaaccta
gggtatgaaagagtttctaagatagaaggtttcggtcaatttagtattaggggtggaatt
atagatgtattttcactagagtatgatacgcctatacgtattgaattatttgatgatgaa
attgaatctataagaacttttgatgtatttactcaaaaatctataaagaaaataaaaaaa
tgtacgataactccatcaagagagtttatatatcctgaaaatacagaagagtctttaact
agattagaaaaagatatttctaaaatagctgatgatgatgtttataagagtatagaaaat
ataaaaacaaaaacctactttgagggtgttgaaaactatatagattatatgtatactgac
gaaaataaaagtatatttacatatcttaaggaagatgcagttgtatttataaatgacgta
tctagattaaaagagagatgtgaaaactatataaatgaatttaaagaaaattataaatta
aacctagaaagaggattggctttaaaacaacaaggtaacttattatatcattattcagat
ttagaatatttagctcaaggtaaaaagttaattttaaatatgcttttaactaagtctata
aaagatatcagtgtaaaatcaattgtaaactttgagagtagagaaattccatcatttaat
ggtaaattagatattttagcagaagaattaactagattaaaatacaatggtcataaagtt
gtattagcgactaatacttatgatagagctaagaagctaaataaagaattattaaattta
ggaatagaaactgtattatctagaaaaagagatgtagaaatatattcatctcaagttgta
atagtcgttgggaatataacatctggttttcagtataaatctataaagtttgatgtcata
acagacaaagagatgattggatctaataaaagggctaaaacctctaaatctaaaaaattc
aataaaggtcaaaaaatagaaacatttttagatttaaatgttggagattatgttgttcat
gaaaatagtggggttggtagatatgtaggtatagaccagctaagtgtaaatggagttaaa
aaagactacatgagagttgtatatcaaggtggtgacaacttatatgttccaattgatcaa
atggacaaaattcaaaagtttataggtgcagacactgaaaaagtaaaattaaataagctt
ggaagcagtgaatggtcaaaggctaaggctaaagttaaaaaagaaatagaagatatgacc
aaagatttagttgaattatatgctaaaagagaaaaaataaaaggctatagattctctaaa
gatacattatggcaaagtgaatttgaaactctattcccatatcaagaaacagatgaccaa
ataaaagctatagaagaaactaaaaaggatatggaatctaataaagttatggataggctt
atatgtggggatgttggatatggaaagacagaagttgcaataagagctatttttaaggca
tgtatggatcaaaaacaagttgcagtacttgttccaactacaattcttgctcaacaacat
tacaatacatttagatcgagatttgaaaactatccaataagagttgaagttttaagtaga
tttaaaactcctaaggagcaaaaacaaattatagaagatgctagaaaaggtttagtagat
gttataataggaacacatagaataatatctaaggatatagatcttcctaacttaggatta
gtagttattgatgaagagcaaagatttggagtaaaacataaagaatctttaaagaaaata
aaatcaacagtagatgtactaactttatcagctacacctatacctagaactcttcatatg
tcattgagtggaataagggatatgagtgttatagaagagcctcctcaagagagatatccc
gttataacctatgtagttgaaggaaaagaaagtataattcaagatgagattgaaagagaa
atagcaagaggtgggcaagtattctttgtttataatagagttgaaagaattgatgaaatg
gctagtatgatacaaagattagtcccagatgctaaaatagcagtagcccatggtagaatg
acagggaaagaactggaaaatataataataggatttttaaataaagagtataatgtactt
gtttgtacaacaataatagaaacaggtatggatatatctaatgctaatactatgattgta
tatgatgcagataaaatgggattagctcaactttatcaattaagaggtagagttggtaga
agtaatagacaaggttatgcatactttatgtatgaaaaagacaaagtattaagtgaaata
gcagaaaagagattgaaagctataagagaatttactgaatttggttcaggatttaagatt
gcaatgagagatttagaaataagaggtgcaggtaatatattaggacctcaacaacatgga
catatggctgtaattggatatgatttatatgtaaaaatgttaaatgaagctataagaaaa
gtaaaaggtgaggtagttcaagaagagatagatgtagaagtggatttacctgtaaatgct
tatatacctgatagttatatagatgatgaaattataaaaattgaaatgtataaaaagatt
gcatctatagaaaatgaaagtgatatgaatgatataaaagatgaattagctgatagattc
tctgatataccaaaatctgtaaatgcacttatttctatagcttacataaaaacgctgtgt
aagcaaattggaattgaaaaaatcagaatgttaaaggatgaagtaattcttttaccactt
acgagatatagaacaaaagaaaaaaatggatataaaataatagatgaattacaaagtata
ctcgaacaaatgtgtataaataaaaaaaataactag
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