Paraclostridium sordellii: RSJ16_02820
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Entry
RSJ16_02820 CDS
T05252
Name
(GenBank) helicase-exonuclease AddAB subunit AddA
KO
K16898
ATP-dependent helicase/nuclease subunit A [EC:
5.6.2.4
3.1.-.-]
Organism
psor
Paraclostridium sordellii
Brite
KEGG Orthology (KO) [BR:
psor00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
psor03400
]
RSJ16_02820
Enzymes [BR:
psor01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
RSJ16_02820
DNA repair and recombination proteins [BR:
psor03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
AddAB pathway proteins
RSJ16_02820
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
PDDEXK_1
AAA_30
DEAD
ResIII
T2SSE
AAA_12
DUF1514
Motif
Other DBs
NCBI-ProteinID:
AUN13209
LinkDB
All DBs
Position
512950..516696
Genome browser
AA seq
1248 aa
AA seq
DB search
MSSPKWTEEQKAVIDSRNCNLLVAAAAGSGKTAVLVERIIQLITDTKNLVDIDKLLVVTF
TNAAASEMRERIGDAIAKALDKSPENSHLQNQLVLLNRASITTIHSFCLDVIKSNFHKIN
IDPNFRIGDQTECSLLKQECIEEVFEEYYEEKNIEFLNLVESYAEKRGDKELQEIILSIY
NFSMASPDPKKWLYDSVELFNIDEDFSFSNSIWATSILDNLKIEVEGIESSMKKAIEYVD
GIEELESYKEKLNIEYLKIVDIVEACKEGWDSAFYHMSNMQFENFSKGVKRLSKDTPEYV
KQARENAKNIRDKNKKSLESIIGATFYKSNSSIYEEIKFLYPVVKAISDLVISFENKYQE
KKREKGIIDFNDIEHFALEILTDKDEYGNILPSDVAKTYVEKFSEIFIDEYQDSNLVQEV
LLSTIAKVEVPNRFMVGDVKQSIYRFRQAKPEIFLEKYANYDTEEGSENRKIMLYKNFRS
RKEVVDCANYIFENIMSKSIGEIEYNQNERLNLGAVFKECEEENSIVGGPTEIHLIEKNN
KKNENSDEEEQEQEEIDNIQLEARMLGKIIKDIMSPKENGEIMKVYDKKIDNYRNVEFKD
IVILLRATSSWAPVFVEELMNMDIPTYADTGIGYFDTIEIKTVLALLQIIDNPMQDIPII
AVLKSPMFSFTPEELIDIRIDNRDVSFYEALCGLKEKDSELSEKIEYFLDKLNDFKTKSL
YMSTDEFLWYVYIETGYYAYVGALPAGSQRQANLKVLFERAKQFEETSFKGLFNFINFVK
RLKKSNSDMGSAKTLGENANVVRIMSIHKSKGLEFPVVICAGMGKNFNNQDFRKDILYHH
KLGYGPQIVDYKRRISYPSIAKEALKTTINMENLSEEMRVLYVAFTRPKEKLIITGSVRD
IESSIKKWAQDIENKGPVSQYQILKGKNFLDWIMPAILKHRDLENLRELVDLDYDYLDDH
DSKWETRLWDKNDISTNKIDEDDEETIASILTNMDLNKDNSDYYDIIKNKLDYKYPFMES
VNRAGTISVTEMKRLENENEESYTTKDLIDRPTEIKTPLFIQEENSKEKLTGAQKGTIMH
LFMQVVDLNNVNNLEEIKNEIERLVKNKIFTSVQAEVINPYKVLKFFKSNLGKRMLSSYF
LKREQAFYLQMKLKDLFEDISEFEKEQNEDTLMLRGIIDAYFEEEDELVIIDYKTDFVNE
ENKLELISKYEKQLEIYSKALNELTGKKVKEAYIYLFGIEEAVLYKFN
NT seq
3747 nt
NT seq
+upstream
nt +downstream
nt
atgagttctcctaaatggacagaggaacaaaaagctgttatagatagtagaaactgtaac
ctgcttgttgcagcagcagcaggatcagggaaaacagctgtactagttgagcgtattatt
caattaataacagatacaaaaaacttagttgatatagataaattattagttgttacattt
actaatgcagcagcatctgagatgagagagcgtataggagatgctattgcaaaagcttta
gataaaagccctgaaaatagtcatctacaaaatcaattagtacttttaaatagagcaagc
ataacaactattcattcattttgcttagatgtaataaagtctaactttcataaaataaat
attgatcctaattttagaataggagatcaaacagaatgttctttacttaagcaggaatgt
atagaagaagtatttgaagagtattatgaagaaaaaaatattgagtttctaaatttagtt
gaaagctatgcagaaaaaagaggagataaagaactacaagaaattatattatctatatat
aatttttctatggcatcaccagatcctaaaaagtggttatatgattcagtagaacttttc
aatatagatgaagattttagtttttcaaactcaatatgggcaacgtctatacttgataat
ttaaagatagaagttgaaggtattgaatctagtatgaaaaaagctatagaatacgttgat
ggaatagaagaattagagagttataaagaaaaactaaatatagaatacttaaaaatagta
gacatcgtagaggcatgtaaagaaggctgggatagcgcgttttatcatatgagtaatatg
caatttgaaaacttttcaaaaggagttaaaagactttctaaagacactccagaatatgta
aaacaagcaagagaaaacgccaaaaatataagagataaaaataaaaaatccttagaaagt
ataataggagcaaccttttataaaagcaatagttcaatttatgaagagattaaattttta
tatcctgtagtaaaagctatatctgatttagttataagttttgaaaataaatatcaagaa
aagaaaagggaaaaaggaataatagattttaatgatatagaacactttgcattagagata
ttaactgataaggatgagtatggaaatatattaccatcagatgttgccaaaacttatgta
gaaaaattctctgaaatatttatagatgaatatcaggatagtaacttagtacaagaagtt
ttattaagcaccatagcaaaggtagaagtcccaaatagatttatggtcggggatgttaag
caaagtatatatagatttagacaagcaaaaccagaaatatttttagaaaaatatgctaat
tatgacactgaagaaggtagcgaaaatagaaaaataatgctatataaaaactttagaagt
agaaaagaagttgtagactgtgcaaactatatatttgaaaatataatgagtaaaagcatt
ggagaaatagagtacaatcaaaatgaaagattaaatttaggagcagtatttaaggagtgt
gaagaagaaaactctatagttggaggacctacggaaattcacttaatagaaaaaaataac
aagaaaaatgaaaattcagatgaagaagaacaagaacaggaagaaattgataatatacag
ttagaagctaggatgttaggtaaaataatcaaagatattatgagccctaaggaaaatggg
gaaataatgaaagtatatgataaaaaaatagataattatagaaatgtagaatttaaggat
attgttattttattaagagcaacatctagctgggctccagtttttgtagaggagcttatg
aatatggatattccaacttatgcagatacaggtataggatactttgatacgatagaaatt
aaaactgtacttgcattactacaaataattgataatcctatgcaagatatacctattata
gctgtacttaaatcacctatgtttagttttacaccagaagaattaattgatatacgtatt
gacaatagagatgttagcttttatgaagcattatgtggattaaaagaaaaagatagtgag
cttagcgaaaaaatagaatatttcttggataaattgaatgactttaaaacgaaatcacta
tatatgagtacagatgaatttttatggtatgtgtatatagaaactggatattatgcatat
gtgggagctcttccagcaggtagtcaaagacaagcaaatttaaaagttttatttgaaaga
gcaaaacaatttgaagaaacaagttttaagggactatttaactttataaattttgttaaa
agattaaaaaaatcaaactctgatatgggaagtgcgaaaacattaggagaaaatgcaaat
gtagtaaggataatgagtatccataaaagtaaagggctagagtttccagttgtaatatgt
gctggtatgggcaaaaatttcaataatcaagattttagaaaagatattttatatcatcat
aaattaggttatgggcctcagattgtagactataaaagaaggatatcttacccaagtatt
gcaaaagaagctttaaaaactactataaatatggaaaacttatctgaagagatgagggtt
ttatatgttgcatttacaaggccaaaggaaaaattgattataacaggttcagtaagagat
atagaatctagtataaaaaaatgggcgcaagatatagaaaataaaggaccggtttctcaa
taccaaatacttaaaggtaaaaattttctagattggataatgcctgctattttaaaacat
agggatttagaaaatttaagagaattagtagatttagattatgattacttagatgatcat
gactccaaatgggaaactaggttatgggataaaaatgatatttcaacaaataaaatagat
gaagacgatgaagaaacaatagcatcaatacttacaaacatggatctaaataaagataat
agtgattattatgatatcataaaaaataaattagattacaagtatccatttatggaatct
gtaaatagagctgggactatatctgttacagagatgaagcgtttagaaaatgaaaatgaa
gaaagttacacaacaaaagatttaatagatagaccaacagaaataaaaacacctttattt
atacaagaagaaaatagtaaggagaagttaactggagcacaaaaaggtacaataatgcat
ttatttatgcaggttgttgatttaaataatgtaaataatctagaagaaataaaaaatgag
atagagagattagtcaaaaataaaatttttactagtgttcaagctgaagttataaatcca
tataaagtgctgaagtttttcaaatcaaacttaggaaaaagaatgttaagttcatatttt
ctaaaaagagaacaagctttttacttacagatgaaattaaaagatttatttgaagatata
agtgaatttgagaaagagcaaaatgaagatacattaatgcttagaggtataattgacgca
tactttgaagaggaagatgaattagttataattgattataaaactgactttgtaaatgaa
gaaaataagttagaacttatatcaaaatatgaaaagcaattagaaatatatagtaaagcc
ttaaatgaattaacaggtaaaaaagtaaaagaggcttatatatatttatttggtatagag
gaagctgttttatataagttcaattaa
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