Paraclostridium sordellii: RSJ16_07060
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Entry
RSJ16_07060 CDS
T05252
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
psor
Paraclostridium sordellii
Pathway
psor02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
psor00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
RSJ16_07060
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
psor03021
]
RSJ16_07060
Transcription machinery [BR:
psor03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
RSJ16_07060
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
Sigma70_r3
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
Sigma70_r1_1
Exonuc_VII_L
Motif
Other DBs
NCBI-ProteinID:
AUN13992
UniProt:
A0A0A1S5H4
LinkDB
All DBs
Position
1391362..1392534
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AA seq
390 aa
AA seq
DB search
METKTPKKESKRVTAKSLIEKGKKQGSLTLMEIMEAFSETELDKDQVENLYETLGNLGIE
VIQKKEEKADADIEFSVEDVDMSSLDIDDSIDEESSKEENTMEIEQIDLTLPKGISIDDP
VRMYLKEIGKIPLLKPHEEAELARRMHEGDEIAKQRLVEANLRLVVSIAKRYVGRGMLFL
DLIQEGNLGLIKAVEKFDYTKGFKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINK
LIRVSRQLLQELGRDPKPEEIAKEMDMTEDKVREIMKIAQDPVSLETPIGEEEDSHLGDF
IPDDDAPAPAEAAAYSLLKEQIEEVLGSLNEREQKVLKLRFGLEDGRARTLEEVGKEFDV
TRERIRQIEAKALRKLRHPSRSKKLRDYLD
NT seq
1173 nt
NT seq
+upstream
nt +downstream
nt
atggaaactaaaacaccaaaaaaagaatcaaagagagtaaccgctaaatctcttatagaa
aaaggtaaaaagcaaggaagtcttacattaatggagataatggaagctttttctgaaaca
gaacttgataaagatcaggttgagaatttatatgaaacattaggaaatttaggaatagaa
gtaatacaaaagaaagaagaaaaggctgatgcagatatagaatttagtgtagaagacgta
gatatgtctagtctagatatagatgacagtattgatgaagaaagttctaaagaagaaaat
accatggaaatagaacaaattgatttaactctacctaaaggaatcagcatagatgaccct
gttagaatgtatcttaaggaaattggtaaaatacctttacttaaacctcatgaggaagcg
gaacttgcaagaagaatgcatgaaggtgatgaaattgctaaacaaagactagtagaagca
aacttaagattagttgtaagtatagctaagagatatgtaggaagaggtatgttatttcta
gatttaatccaagaaggtaacttaggtcttataaaagctgttgaaaaattcgactacaca
aaaggatttaagtttagtacttatgctacatggtggataagacaagctataactcgtgct
atagcagatcaagcaagaacaataagaataccagttcatatggttgaaactataaataaa
ttaataagagtttcaagacaattgctacaggagttaggtagagatccaaagcctgaggaa
attgcaaaagaaatggatatgacagaagataaagttagagaaattatgaaaattgctcaa
gacccagtttcattagaaactcctataggagaagaagaagatagtcacttaggagacttt
ataccagatgatgatgctccagcaccagctgaagcagcagcttattctttattaaaagaa
caaattgaagaagttttaggatctttaaatgagagagaacaaaaagttttaaaactaaga
tttggacttgaagatggtcgtgcaagaactcttgaagaagttggaaaagaatttgatgta
acaagagaaagaataagacaaatagaagctaaagctttaagaaaactaagacatccaagt
agatctaaaaaacttagagattacttagattaa
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