Paraclostridium sordellii: RSJ16_10135
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Entry
RSJ16_10135 CDS
T05252
Name
(GenBank) DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
psor
Paraclostridium sordellii
Pathway
psor03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
psor00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
RSJ16_10135
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
psor03019
]
RSJ16_10135
03400 DNA repair and recombination proteins [BR:
psor03400
]
RSJ16_10135
Enzymes [BR:
psor01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
RSJ16_10135
Messenger RNA biogenesis [BR:
psor03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
RSJ16_10135
DNA repair and recombination proteins [BR:
psor03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
RSJ16_10135
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RQC
HRDC
DEAD
Helicase_C
RecQ_Zn_bind
HTH_40
ResIII
Helicase_Sgs1
HTH_11
Trp_repressor
Motif
Other DBs
NCBI-ProteinID:
AUN16023
LinkDB
All DBs
Position
complement(2029865..2032282)
Genome browser
AA seq
805 aa
AA seq
DB search
MNLKSLDILKKYYGYTTFRKGQEEIINNILNGNDILAIMPTGGGKSICYQIPALMLNGIT
IVISPLISLMKDQVDTLKSMGINATLINSSLSSLDFNKVINGIKEDEYKIIYIAPERLDS
YEFTSIIRYKTISQIAIDEAHCVSQWGHDFRVSYRKISSFINSLESRPIVTAFTATASIE
VREDIIRLLTLDNPKLFITGFNRENLNIKIEKSSSKNKYLLSYLENHKSESGIIYTATRK
EVDKIYEGLIKRGYSASKYHAGLGIEERRLNQEAFTKDNVSIMVATNAFGMGIDKPNIRY
VIHYNMPQSIENYYQEIGRAGRDGEKSECVLLFAPGDVHIQKYLIELGSENPDRKNLQYK
KLREMLDIIYSNDCYRKSIINYFGEEFEGNCKNCSNCLDTGELIDKTLDAQKVISCIARM
KRSFGITMIIDVLRGSKNKKVLQFGFNKLSTYGIMKDYSQEELKTFINTLISHGFIDSID
GTYPTIKLNETSMKIIKGDIKVEFKESKVSKNLEVSNELYEILREARFKIANEEKIAPYM
VFGDGTLRIMASKYPTNRNSMLNISGVGEIKYDKYGKVFESIISKYVDENNINKTVDTNE
IDFMEITTDKDLYNILYDIRSDIANKEKVLPPMIISKNSLKEISGRYPITDKQLKDISGF
GPVKVEKYGSRILEEVVKYVKEKEIDPNWTYKKRLKLIIDGDSRSNEEIAIDMLKDSESL
ENISNELEVSISTILGYISDMLKEGKSIDFEINLNKYFIKEEEELIINVCESQGIDKISI
IKKNLPDYIRYESIRSVILKKYYSL
NT seq
2418 nt
NT seq
+upstream
nt +downstream
nt
atgaatttaaaatcattagatatattgaaaaaatattatggatatacaacatttagaaaa
ggtcaagaagaaataataaataacattttaaatggaaatgacatattagcaataatgcca
actggtgggggaaaatctatttgttatcaaattccagcacttatgttaaatggtataaca
atagttatttcacctcttatatctttaatgaaggaccaagtagatactttaaaatctatg
ggaattaatgctactttaataaatagttctttatctagtttagattttaacaaggtaata
aatggaataaaagaagacgaatataaaattatatatatagctccggaaagattagattct
tatgaatttacaagtataataagatataaaactataagccaaattgctatagatgaagct
cactgtgtatcgcaatggggacatgattttagagtaagttatagaaaaatttctagtttt
ataaatagcttagagtctaggcctattgtaactgcatttacagcaactgcttctattgaa
gttagagaagatatcataaggttattaacattagacaatcctaaattgtttataactggg
tttaatcgtgaaaatcttaatattaagatagaaaaatcttctagcaaaaataagtattta
ctatcttatttagaaaatcataaaagtgaaagtggtataatctatactgcaacaagaaaa
gaagtagataaaatttatgaaggactaattaaaagaggatatagtgcttctaaatatcat
gctggcttaggaattgaggaaagaagattaaatcaagaagcttttacaaaagacaacgta
agtataatggttgctacaaatgcctttggaatgggtatagataaaccaaatattagatat
gttatacattataatatgcctcagagtatagaaaactattatcaagagataggtagagct
ggtagagatggtgaaaaaagtgaatgcgtattattatttgctccaggtgatgttcatata
caaaaatatttgattgaattaggaagtgaaaatccagatagaaaaaatctacaatataaa
aaactgcgagaaatgttagatataatatatagtaatgattgttatagaaaaagtataatt
aattactttggagaagaatttgaaggcaattgtaaaaattgtagtaattgtttagataca
ggagagttgattgataaaactcttgatgcacagaaagttatatcatgtatagctaggatg
aaaagaagttttggaataactatgataatagatgtattgagaggatctaaaaataaaaag
gtgttacagtttggatttaacaaattatctacatatgggataatgaaagattattcacaa
gaggaactaaaaacttttatcaatacattaatttctcatggatttatagattctatagat
ggaacatatccaactataaaattaaatgaaacctctatgaaaattataaaaggagatata
aaagtagaatttaaggaaagtaaagtttctaaaaatctagaagtctctaatgaactttac
gaaattttaagagaagctagatttaaaatagctaatgaagaaaaaattgcaccatatatg
gtttttggagatggaacacttagaattatggctagtaaatatcctacaaatagaaattct
atgctaaatatatctggtgtaggtgaaattaagtatgataagtatggaaaagtttttgaa
agtattataagcaaatacgttgacgaaaacaatataaataaaactgtagatacaaatgaa
attgattttatggaaattaccacagataaagatttatacaatatattatatgatattaga
agtgatatagctaataaagaaaaagtattaccaccaatgataatatcaaaaaactcttta
aaagagattagtggtagatacccaattacagataaacaattaaaggacattagtggtttt
ggacctgtcaaagttgaaaaatatgggagtagaattttagaagaagtagtaaaatatgta
aaagaaaaagaaattgaccctaactggacatataaaaagagattaaaactaataatcgat
ggagatagtagaagcaatgaagaaattgctatagacatgttaaaagatagtgaaagccta
gaaaatatatctaatgaattagaagtgtcaatttctacgatattaggttatatttcagat
atgctaaaagaaggaaagtcaattgattttgaaattaatttaaataaatattttataaaa
gaggaagaagaattaataataaatgtttgtgaatcacaaggtatagataaaataagtatt
ataaaaaagaatttgccagattatatacgttatgaatcaatacgttcagttatattaaaa
aaatattattctttataa
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