Paraclostridium sordellii: RSJ16_12605
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Entry
RSJ16_12605 CDS
T05252
Name
(GenBank) RNA helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
psor
Paraclostridium sordellii
Pathway
psor03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
psor00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
RSJ16_12605
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
psor03019
]
RSJ16_12605
03009 Ribosome biogenesis [BR:
psor03009
]
RSJ16_12605
Enzymes [BR:
psor01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
RSJ16_12605
Messenger RNA biogenesis [BR:
psor03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
RSJ16_12605
Ribosome biogenesis [BR:
psor03009
]
Prokaryotic type
rRNA helicases
RSJ16_12605
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
Utp25_C
AAA_19
NAT10_TcmA_helicase
Motif
Other DBs
NCBI-ProteinID:
AUN15017
LinkDB
All DBs
Position
complement(2553362..2554816)
Genome browser
AA seq
484 aa
AA seq
DB search
MKTKFNEFNLDKNILKSLFNMGYEEPSKVQKEVIPKLIKCENIVVKSKTGSGKTASFGIP
ICEMINIEENCIQALIIVPTRELAIQVKDEISNIGRIKKVRCSAIFGRQPIKDQINELKQ
RVHVVVATPGRVIDHIKRETIDIKNLKYLIIDEADKMLNKGFIDDMEFIFKKISKQCNIG
LFSATIDKDIKYVYEKHIQSPNIIEIKNDKSKDKPQIRERLINSTTIKKYDCLKNIIYYN
NPKTTIIFLNTKDGVSNLYKKMKQDKFSVAQIHGDMSQEKRIFVIKDFKEGKYNVLVSTD
VASRGIHIDDVSLVINYDVPKDKENYVHRIGRTGRQDKYGQAITIITEKDESVINDIQEY
IGYNIENLKDLNEESIELGKRKFEEKSKKLFKTNRINKKDSKLNSEVTRIYLNAGKKKKI
RVGDIVGAFSNIDGIKNEDIGVIEISDLCSYVDLLNYKGEIFLKKHKQIYIKKKPVKVKR
DNTI
NT seq
1455 nt
NT seq
+upstream
nt +downstream
nt
atgaaaacgaaatttaatgaatttaacctggataaaaatatattaaaatcactttttaac
atgggatatgaagaaccctcaaaagtacaaaaagaggttatacctaagcttataaaatgc
gaaaatatagtggttaagtctaaaacaggtagtggaaagacggctagttttggaataccg
atatgtgaaatgataaatatagaagaaaactgtattcaggcattgattattgttcctact
agagaattagctatacaagtaaaagatgaaatatctaatataggaagaattaagaaagtt
agatgcagtgctatatttggaagacaacctataaaggatcaaataaatgaattaaaacaa
agagttcatgttgttgtggctactccggggagagtaattgatcatataaaaagagaaact
atagatattaaaaatctaaaatatttaattatagatgaagctgataaaatgttaaataaa
gggtttatagatgatatggagtttatatttaaaaagatttcaaaacaatgtaatattggt
ctattttcagcgactatagataaagatataaaatatgtttacgaaaaacatatacaaagt
ccaaatattatagaaataaaaaatgataagtctaaagataaacctcaaattagagaaaga
ttaataaattcaacaacaattaaaaaatatgattgtttaaagaatataatatattataat
aatccaaaaaccactattatatttttaaacacaaaagatggagttagtaatttatataaa
aagatgaagcaagataagttctctgtagcacaaatccatggagatatgtctcaagaaaaa
agaatatttgtaattaaagattttaaggaaggaaaatataatgtactagttagcactgat
gttgcaagtagaggaatacatatagatgatgtttcattagtaataaactatgatgttcca
aaagataaggaaaattatgtacacagaataggtaggactggaagacaagacaaatatggg
caagcaataactattataacagaaaaagatgagagtgttataaatgatatacaagaatat
attggatataatatagaaaatttaaaggacttaaatgaagagagtatagaattaggtaaa
agaaagtttgaagaaaaatctaaaaaattatttaaaactaatcgtataaataaaaaagat
agtaagttaaatagtgaggttactagaatatatttaaatgcgggaaaaaagaaaaaaata
agagttggagatattgttggagcttttagcaatattgatggtataaaaaatgaagatata
ggagttattgaaataagtgatctatgctcttatgtagatttacttaattataaaggtgag
atatttttaaaaaaacataaacagatatacataaaaaagaaacctgttaaagttaagaga
gataatacaatttag
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