KEGG   Paraclostridium sordellii: RSJ16_16835
Entry
RSJ16_16835       CDS       T05252                                 
Name
(GenBank) AAA family ATPase
  KO
K03581  exodeoxyribonuclease V alpha subunit [EC:3.1.11.5]
Organism
psor  Paraclostridium sordellii
Pathway
psor03440  Homologous recombination
Brite
KEGG Orthology (KO) [BR:psor00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03440 Homologous recombination
    RSJ16_16835
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:psor03400]
    RSJ16_16835
Enzymes [BR:psor01000]
 3. Hydrolases
  3.1  Acting on ester bonds
   3.1.11  Exodeoxyribonucleases producing 5'-phosphomonoesters
    3.1.11.5  exodeoxyribonuclease V
     RSJ16_16835
DNA repair and recombination proteins [BR:psor03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   HR (homologous recombination)
    RecBC pathway proteins
     RSJ16_16835
SSDB
Motif
Pfam: AAA_19 AAA_30 HHH_RecD2 OB_YrrC SH3_13 UvrD_C_2 Viral_helicase1 HHH_5 AAA_11 PIF1 NAT10_TcmA_helicase nSTAND3 AAA_22 T2SSE SLFN-g3_helicase UvrD-helicase DEAD HHH_3 ATPase_2 HHH_2 ABC_tran NPHP3_N AAA SRP54 KTI12 AAA_28 DNA_pol_lambd_f TrwB_AAD_bind PhoH RsgA_GTPase Thymidylate_kin UvrD_C AAA_24 TraI_hel_assoc_N AAA_5 AAA_16 TK AAA_14 AAA_29 FtsK_SpoIIIE ResIII
Other DBs
NCBI-ProteinID: AUN15808
LinkDB
Position
complement(3417778..3420006)
AA seq 742 aa
MEKIEGMISDIVFKNEDNGYVIAHLSNENNDVVIVGCMPTLTVGESIEVEGKWVNHKTYG
TQFEVSSFMPVTPSSIEGIYVYLSSGMIKGIGEKMAKRIIDKFGVDTLDIIQNSPHRLSE
VEGIGSKKIEQIAKSYEDNRELRNIIMQLSPYGITPNLCLKIYKKYKNKAVDVISRNPYK
LAEDVRGIGFKVADKIAENLGIDKLSKDRIMQGILYSLNQSLASGHTYLPKDILVQESSK
LLGVEKEYILDCILGLAYDQKIHIEKGLGHEDHIYLIPYYLSENGVCKQIIKLAQSDFKD
LNIDVEKEIEKVEEETGIKLANNQALAVKEAIKSGLVVITGGPGTGKTTTINTIIKVFEN
NEQEVLLAAPTGRAAKRMSETSNKEAKTIHRLLEMGYATDSEELVFLKDEEDPIKADVVI
VDEVSMVDIVLMYSLLKAIKPGTRVILVGDSDQLPSVGAGNVLKDIIDSEVINVVRLNEI
FRQAQESMIVVNAHRINQGLPLHLNVKGKDFFFIKKDTNEEILKEIVGLVSTRLPKFYNL
DKLKDIQVLAPMRKGDLGVVNLNIELQKYLNKEEKYKVEETLQKRIFRVGDKVMQIKNNY
TKKWETEDKSESGEGIYNGDIGYIYHIDKENKIIYVLFDQTKIVSYEYSELDELDHSFCT
TIHKSQGSEFPAIVIPVTWAPPMLLNRNLLYTAVTRAKKLVVLVGDVKYLEYMIRNNKTN
DRHSNLSKKLNRLKEEGVLVKN
NT seq 2229 nt   +upstreamnt  +downstreamnt
atggaaaaaatagaaggaatgataagcgatattgtatttaaaaatgaagataatggatat
gttatagctcatttatcaaatgaaaataatgatgttgtaattgttggatgtatgcctact
ttaacagttggggagagcatagaagtagaaggtaagtgggtaaatcataagacatatggg
actcaatttgaagttagtagttttatgccagtaactccatcttctatagaaggtatatat
gtttatctatcttctggaatgataaagggaataggcgagaagatggctaaacgaataatt
gataaatttggagttgacacactagatataattcaaaattctcctcatagactatctgaa
gtcgaaggaatcggaagtaaaaaaatagagcagattgctaaaagttatgaagataataga
gagttgagaaatataataatgcagttatctccttatggtataactcctaacttatgctta
aaaatttataaaaaatataaaaataaagctgtagatgttataagtagaaatccatataaa
ttagcagaagacgtaagaggaattggatttaaagttgcagataaaattgcagaaaattta
ggaatagataagctttcaaaagatagaataatgcaaggaatattatattctcttaatcag
tcattggctagcggacatacttatcttccaaaggatattttagtacaagagtcaagtaaa
cttttaggagtagaaaaagaatatatattagactgcattttagggttagcttacgatcaa
aaaatacatatagaaaaaggtttgggacatgaagatcatatatatttaataccatattac
ttatcagaaaatggagtttgtaagcaaatcataaaattagcacaatcagattttaaagat
ttaaatatagatgtagaaaaagaaatagaaaaagtagaagaagagacaggaataaaatta
gcaaataatcaagctttggcagttaaagaagctataaaaagtggtttagtagttataact
ggagggcctggtactgggaaaacaacaacaataaataccataattaaagtatttgagaac
aacgaacaagaagttttacttgcagccccaacgggaagggcggctaagagaatgagtgag
acatctaataaagaagcaaaaactattcatagacttttggaaatgggatatgctacagac
tcagaagagttggtatttctaaaagatgaagaagatccaataaaagctgacgtagttata
gtggatgaggtatcaatggtggatatagtccttatgtatagtttattaaaagctataaaa
cctggaactagggttatattagttggtgatagtgatcagcttccatctgtaggggcagga
aatgttttaaaagatataatagattcagaagttataaatgttgttagattaaatgaaatt
tttaggcaagctcaagagagtatgatagtagtaaatgcacataggattaatcaaggctta
ccacttcacttaaatgttaaaggcaaggatttcttttttataaaaaaagatactaatgaa
gaaattttaaaagaaatagttggattagtgagtactagactacctaaattctataattta
gataaattaaaagatatacaggtattagctcctatgagaaagggagatttaggtgtagtt
aatctaaatattgaattacaaaagtatttgaataaggaagaaaagtataaggttgaagag
acattacaaaaaaggatatttagagttggcgataaagtaatgcaaataaaaaataactat
actaaaaagtgggaaacagaagataaaagtgaaagtggagaaggtatatacaatggagat
ataggctatatttatcatatagataaggaaaataaaattatttatgtattgtttgatcaa
acaaagatagtatcatatgagtattcagaattagatgaactggaccatagtttttgtaca
actatacataagagccaaggaagtgaatttccagctatagttatacctgtaacgtgggct
ccacctatgttattaaatcgtaacttactatatacagctgtaacaagagcgaaaaaactt
gttgtgctagtaggggatgtaaaatatctagaatacatgataagaaataataaaactaat
gacaggcattctaatttaagtaaaaagctaaatagattaaaggaagaaggggtgttggta
aaaaattaa

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