Pseudomonas sp. Os17: POS17_0569
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Entry
POS17_0569 CDS
T04177
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
psos
Pseudomonas sp. Os17
Pathway
psos03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
psos00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
POS17_0569
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
psos03019
]
POS17_0569
03016 Transfer RNA biogenesis [BR:
psos03016
]
POS17_0569
Enzymes [BR:
psos01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
POS17_0569
Messenger RNA biogenesis [BR:
psos03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
POS17_0569
Transfer RNA biogenesis [BR:
psos03016
]
Prokaryotic type
tRNA degradation factors
POS17_0569
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
S1
WHD_RNase_R
RNase_II_C_S1
TRAM
OB_Dis3
TRAM_2
SRP-alpha_N
Motif
Other DBs
NCBI-ProteinID:
BAQ72263
LinkDB
All DBs
Position
637659..640286
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AA seq
875 aa
AA seq
DB search
MADWQSLDPEAAREAEKYENPIPSRELILQHLADRGSPASREQLVEEFGLTTEDQLEALR
RRLRAMERDAQLIYTRRGTYAPVDKLDLILGRISGHRDGFGFLVPDDGSDDLFMSPAQMR
LVFDGDRALARVSGLDRRGRREGVIVEVVSRAHESIVGRYFEEGGIGFVVADNPKIQQEV
LVTPGRNANAKIGQFVEVKITHWPTPRFQPQGDVIEVVGNYMAPGMEIDVALRTYDIPHV
WPEAVLKEAGKLKPEVEEKDKEKRIDLRDLPFVTIDGEDARDFDDAVFCEAKPGKLRLFG
GGWKLYVAIADVSSYVKIGSALDAEAQVRGNSVYFPERVIPMLPEQLSNGLCSLNPKVDR
LAMVCEMTISKSGEMTDYQFYEAVIHSKARLTYNKVSTMLEQPKTSEAKQLRGEYGDVLP
HLKQLYALYKVLLGARHTRGAIDFETQETRIIFGSERKIAEIRPTTRNDAHKLIEECMLA
ANVATAEFLKKHEIPALYRVHDGPPPERLEKLRAFLGELGLSLHKGKDGPTPKDYQALLE
TIKDRPDYHLIQTVMLRSLSQAVYSADNQGHFGLNYEAYTHFTSPIRRYPDLLTHRAIRS
VIHSKQDTPHVRRAGAMTIPKARIYPYDEATLEQLGEQCSMSERRADEATRDVVNWLKCE
FMKDRVGESFPGVITAVTGFGLFVELTDIYVEGLVHVTALPGDYYHFDPVHHRLAGERTG
RSFRLGDTVEVRVMRVDLDERKIDFEMAEKTINAPIGRKKRGVVDVPASKAVEEPAPAKA
GRRSSTKEKAVEAYRPSDAAAKNAEVRKSREMKRALLAEAKSGGKAASGGKSGKSAPARD
SDRPAKPSKHRKGPPKAGSASGAKSGGARKPKAKS
NT seq
2628 nt
NT seq
+upstream
nt +downstream
nt
atggccgattggcagtccctcgatcccgaggccgctcgtgaagcggaaaaatacgaaaac
cctattcctagccgcgaactcatcctccagcaccttgctgaccggggttcgcctgctagt
cgcgagcagctggtagaagagttcggtctgaccacagaggaccaactggaagccctgcgt
cgccgcctgcgcgccatggagcgcgatgctcaactgatctacacccgccggggtacttat
gcaccggtggataagctcgacctgatcctgggccgtatcagcggtcatcgcgacggtttc
ggcttcctggtgccggatgatggcagtgatgacctgttcatgagcccggcgcaaatgcgt
ctggtcttcgatggcgaccgcgctctggcccgggtttccggcctggatcgtcgtggtcgt
cgcgaaggcgtgatcgtcgaagtggtgtcccgtgcccatgaaagcatcgtgggtcgttac
ttcgaagaaggcggcatcggcttcgtggtggcggataacccgaagatccagcaggaagtg
ctggttactcccggtcgcaatgccaacgccaagatcggtcagttcgttgaggtgaaaatc
acgcactggccaacgccgcgcttccagccgcaaggcgacgtgattgaagtggtgggcaac
tacatggctccaggcatggagatcgatgtcgccctgcgtacctacgacatccctcatgtc
tggcccgaagccgtgctcaaggaagccggcaagctcaagccggaagtggaagagaaggac
aaagagaagcgcatcgacctgcgtgacctgcctttcgtcaccatcgacggcgaagacgct
cgcgacttcgacgatgcggtgttctgcgaagccaagcccggcaaactgcgcctgttcggt
ggcggttggaagctgtatgtggcgatcgccgatgtgtccagctacgtgaagattggttcg
gccctggacgccgaagcccaagtgcgcggcaactcggtgtatttccccgagcgggtgatc
ccgatgttgccggagcagttgtccaatggcctgtgctcgctgaacccgaaagtcgatcgc
ctggccatggtatgcgagatgaccatctccaagtccggcgagatgaccgactaccagttc
tacgaagcggtgatccactccaaggcgcgtctgacctacaacaaggtcagcaccatgctc
gagcagccgaaaaccagcgaagccaagcagctgcgcggcgagtatggtgatgtgctgccc
cacctcaagcagctgtatgcgctgtacaaggtattgctcggtgcccgccatacccgtggc
gccatcgacttcgaaacccaggaaacccggatcattttcggctccgagcgcaagatcgcc
gaaattcgcccgaccacccgcaacgatgcccacaagctgattgaggagtgcatgctggcc
gccaacgtggccactgccgagttcctcaagaagcatgagattccggcgttgtaccgggtg
cacgatggtccgccgccggagcgcctggaaaagctgcgcgccttccttggcgagctgggc
ctgtccctgcataaaggcaaggacggcccgacgccgaaggactaccaggcactgctggaa
accatcaaggatcgtccggattaccacctgatccagaccgtgatgctgcgttccctgagc
caggcggtatacagcgccgataaccagggccacttcggcctgaattacgaagcctatacc
cacttcacttcgccgatccgtcgctacccggacctgctgacccatcgggccatccgcagt
gtgattcactccaagcaagacacgccgcacgtgcgtcgagctggagcgatgaccattccc
aaggcgcgtatctacccgtacgacgaagccaccctggaacagctcggcgaacagtgctcg
atgagcgagcgccgtgccgacgaggccactcgcgacgtagtgaactggctcaagtgcgag
ttcatgaaggatcgcgtcggcgagtccttcccgggggtgatcactgcggtgaccggtttc
ggtctgttcgtcgagctcaccgatatctatgtcgaaggcctggtgcatgtcaccgccttg
ccgggtgactactaccatttcgatcctgtgcatcaccgcctggcgggcgagcgcaccggg
cgcagtttccgcctgggcgacaccgtggaagtgcgggtcatgcgcgtcgatctggatgag
cgcaagatcgacttcgagatggccgaaaaaaccatcaatgccccgatcggccgcaagaag
cgcggtgtcgtggacgtgcctgcaagcaaggcggtagaagaaccggcgccggccaaggcg
gggcgtcgcagctccaccaaggagaaggcggtcgaggcttatcgtccgagcgacgcggcg
gcgaaaaacgccgaagtacgcaagagtcgtgaaatgaaacgggcgctgctggctgaagcc
aaaagcggtggtaaagcggcgtctgggggaaagtccggcaaatcggctccggccagagac
agcgaccgtccagccaagccgagcaaacatcgtaaaggtccgcccaaggcgggctctgct
tccggcgcgaaaagcggcggggcgcgcaaacctaaggccaagtcatga
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