Pseudomonas sp. Os17: POS17_1598
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Entry
POS17_1598 CDS
T04177
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
psos
Pseudomonas sp. Os17
Pathway
psos03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
psos00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
POS17_1598
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
psos03019
]
POS17_1598
03400 DNA repair and recombination proteins [BR:
psos03400
]
POS17_1598
Enzymes [BR:
psos01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
POS17_1598
Messenger RNA biogenesis [BR:
psos03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
POS17_1598
DNA repair and recombination proteins [BR:
psos03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
POS17_1598
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RQC
DEAD
HRDC
Helicase_C
RecQ_Zn_bind
HTH_40
ResIII
HTH_23
Sigma70_r4_2
Sigma70_r1_2
Motif
Other DBs
NCBI-ProteinID:
BAQ73292
LinkDB
All DBs
Position
1763279..1765405
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AA seq
708 aa
AA seq
DB search
MLEQAQRVLKDIFGYDSFRGRQGAIIERVASGGDALVLMPTGGGKSLCFQVPALLREGLA
VVVSPLIALMDDQVATLEELGVAAAALNSTLSAEQQRDLAARIRRGEVKMLYLAPERLVQ
PRMLAFLQNLDIALFAIDEAHCVSQWGHDFRPEYLQLGQLAEMFPNVPRIALTATADKRT
REEIVNRLHLQNAERFLSSFDRPNIFYRIVPKEQPRKQLQAFLNERRSDAGIVYCLSRKK
VDEVAAFLCEQGFTALPYHAGLPNELRAYHQKRFLNEEGLIMVATIAFGMGIDKPNVRFV
AHMDLPKSLEAYYQETGRAGRDGLPADAWMAYGLQDVLMLKQMLQNSEGDERHKRLEQHK
LDAMLALCEETRCRRQTLLAYFDEDMPQPCGHCDNCVDGVQTWDATEPARQALSAIYRTG
QRYGVGHLVDVLLGKDTEKVRSFGHQHLSVFGVGKARSEGEWRSLFRQLVARGLADIDLE
GYGGLRLSDSCRPLLKGEVTLELRRDLKPQSSPKSSTSQASQLVRGEEREQWEALRALRR
KLAEEHGVPPYVIFPDSTLLEMLRSQPGSMAEMAEVSGVGARKLERYGAAFLEVLGGGVE
APKVVADIRHELITLARAGMTPVQIAGQLQCTEKNVYTLLAEAIGKQQLSLEQALDLPED
LLGEIQDAFLDGEGELPPVAEISELFAGRVPEGVLYCVRAALQSEFEI
NT seq
2127 nt
NT seq
+upstream
nt +downstream
nt
atgctcgaacaggctcaacgcgtcctcaaggacatcttcggctacgacagtttccgtggt
cgccaaggtgcgatcattgagcgcgtggccagtggcggcgatgccttggtgctgatgccc
accggtggtggcaagtccttgtgtttccaggttccggccctgcttcgcgaaggattggcg
gtggtggtatcgccactgatcgcgctgatggacgatcaggtggccacccttgaggaactc
ggtgtcgcggctgccgccttgaactcgaccctgagtgccgagcagcagcgtgacctggcg
gcgcgtattcgtcgcggcgaggtgaagatgctctacctggctcctgagcgcctggttcag
ccgcggatgctggcgttcctgcagaacctcgacatcgccctgttcgccatcgacgaagcc
cactgcgtgtcccagtggggccacgacttccgtcccgaatacctgcagttggggcaactg
gcggaaatgttccccaacgtgccgcgcattgccctgaccgccaccgccgacaagcgcacc
cgggaagagatcgtcaatcgcctgcacctgcagaacgccgagcgctttctctccagcttc
gaccggccgaatatcttctaccgcatcgtgcccaaggagcagccgcgcaagcagttgcag
gcgttcctcaacgagcggcgcagcgatgccggtatcgtctattgcctgtcgcgcaagaag
gtcgacgaagtggcggccttcctctgtgagcagggctttaccgcgctgccgtatcacgcc
ggcctgcccaatgagctgcgggcctatcaccagaagcgcttcctcaacgaggagggcctg
atcatggtggccaccatcgctttcggcatgggtatcgacaagcccaacgtgcgttttgtc
gctcatatggatctgcccaagtccctggaagcctactatcaggaaaccggtcgcgccggc
cgtgacggcctgccggcggatgcctggatggcctacgggctgcaggacgtgctgatgctc
aagcagatgctgcagaactccgagggcgacgagcgccacaagcgtctcgagcagcacaag
ctcgatgcgatgctggccctgtgcgaggaaacccgctgccggcgccagacattgctggcc
tatttcgatgaggacatgccccagccttgtggccattgcgacaactgtgtcgacggggtg
cagacctgggacgccaccgagccggcacgccaggcactgtcggcgatctatcgcaccggc
cagcggtatggcgtcggtcacctggtggatgtgctgctgggcaaggacacggaaaaagtg
cgcagtttcggtcatcagcacctgtcggtgtttggcgtcggcaaggctcgcagcgaaggc
gagtggcgctccctgtttcgccagttggtggcgcgcgggctggcggatatcgacctggaa
ggctacggcggcttgcgtctgagcgacagttgtcgtcccttgctcaagggggaggtgacc
ctggagctgcgccgcgatctcaagccgcagagcagcccgaaaagcagtaccagtcaggcc
agccagctggtacggggcgaggagcgcgagcagtgggaagcgctgcgagccctgcgccgc
aagctggcggaagagcatggggtgccgccttatgtgattttccccgactcgaccttactg
gagatgctgcgcagccagcccggctccatggcggagatggccgaggtcagcggagtcggc
gcgcgcaagctggagcgttatggcgcggccttcctcgaagtgctgggcggcggtgtcgag
gcgccgaaggtggtcgccgatatccgtcacgagttgatcaccctggcccgtgccgggatg
accccggtacagatcgccgggcaactgcaatgcacggagaagaatgtctacaccttgctg
gccgaagccataggcaagcagcagttgtcgctggaacaggctctggacctgccggaagac
ctgctgggagaaatccaggatgctttcctcgacggtgagggtgaattgccgccggtggcc
gagatcagcgagttgtttgccggacgcgtgcctgaaggggttttgtattgcgtgcgtgcg
gccttgcagtcggagtttgaaatttga
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