Pseudomonas sp. Os17: POS17_1801
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Entry
POS17_1801 CDS
T04177
Symbol
rne
Name
(GenBank) ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
psos
Pseudomonas sp. Os17
Pathway
psos03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
psos00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
POS17_1801 (rne)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
psos03019
]
POS17_1801 (rne)
03009 Ribosome biogenesis [BR:
psos03009
]
POS17_1801 (rne)
Enzymes [BR:
psos01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
POS17_1801 (rne)
Messenger RNA biogenesis [BR:
psos03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
POS17_1801 (rne)
Ribosome biogenesis [BR:
psos03009
]
Prokaryotic type
rRNA processing factors
POS17_1801 (rne)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
TcdA_TcdB
Motif
Other DBs
NCBI-ProteinID:
BAQ73495
LinkDB
All DBs
Position
complement(1970056..1973304)
Genome browser
AA seq
1082 aa
AA seq
DB search
MLINATQPEELRVALVDGQRLYDLDIESGAREQKKANIYKGRITRIEPSLEAAFVDFGSE
RHGFLPLKEISREYFKKAPEGRVNIKDVLSEGQEVIVQVEKEERGNKGAALTTFISLAGR
YLVLMPNNPRAGGISRRIEGEERNELREALNGLVAPADMGLIVRTAGLGRSSEEMQWDLD
YLLQLWTAIKEASLDRSAPFLIYQESNVIIRAIRDYLRQDIGEVLIDSVEAQDEALTFIR
QVMPQYASKIKLYEDSVPLFNRFQIESQIETAFQRVVELPSGGSIVIDPTEALVSIDINS
ARATKGSDIEETALQTNLEAAEEIARQLRLRDIGGLIVIDFIDMTPAKNQRAVEEKVREC
LEADRARVQIGRISRFGLLEMSRQRLRPSLGESSGIVCPRCNGTGIIRDVESLSLAILRL
IEEEALKDRTAEVRAQVPIPVAAFLLNEKRNSITKIELRTRARIVILPNDHLETPHFEVQ
RLRDDSPEANINQSSYEIAAAAAEAEEVQPAAATRTLVRQEAAVKTAPARANAPVPTEAV
APVAAPAPVAAEPSLFKGLVKSLVSLFASKEEPAAPVVVEKPATERPARNNEEQRRNGRQ
QSRNRNGRRDEERKPREERAPREERAPREERQPREVREAREEVQGVAREERAPRAPREER
QPRAPREDRKPRGEREERVRELREPLDAAPAAAAATAAVAVAEERPARPPREERQPRPPR
EERQPRAEQAQAAAASEEEALPNEEQLQEEGQDNADGERPRRRSRGQRRRSNRRERQRDA
NGNVIEGSEENAEEPSSADLAAGLAVTAAVASTAISANAEAQAHQQAERATAAVAEQAPQ
APVVEATTEVEAPAAPAVELAPIEQAPAAEVAPVVAEQPQVEVAAEPAVTVEAQPVVAEQ
PVAEPAVQAPVVEETAIEPAQEAPAPAAEPVAIEQPVIAQQPAQAEEPAPAVAPVVTEAP
APVVEAAPVSALTSNGRAPNDPREVRRRKREAERLQKEAELAAAAAPVEAVAAAEPAPVE
APVVVEAAPAPVEAAEAAPAPVTEPVAEQPAPVVEEAPHNVEHAVEHVAHTEEKQHEPKP
LA
NT seq
3249 nt
NT seq
+upstream
nt +downstream
nt
atgctgattaacgcaactcaacccgaagagttgcgtgttgccctggtagatggccagcgc
ctctacgatctggacatcgagtccggtgcacgcgagcagaaaaaggccaacatctataaa
ggccgcatcactcgcatcgaaccaagcctcgaggctgcctttgtcgacttcggctctgag
cgccacggcttcctgcccctcaaagaaatctcccgcgaatacttcaagaaagcccccgaa
ggccgcgtcaacatcaaggacgtcctgagcgaaggccaggaagtcatcgtccaggtcgag
aaagaagagcgtggcaacaagggcgccgccctgaccaccttcatcagcctcgccggtcgc
tacctggtactgatgccgaacaacccgcgtgccggcggcatctcccgccgcatcgaaggc
gaagagcgcaacgaactgcgtgaagcgctgaacggcctggtagctcctgccgacatgggc
ctgatcgtgcgcaccgccggcctgggtcgcagcagcgaagagatgcagtgggacctggat
tacctgctgcaactctggaccgccatcaaggaagcctccctggatcgctccgcgccattc
ctgatctaccaggaaagcaacgtgatcatccgcgcgatccgcgactacctgcgccaggac
atcggcgaagtgctgatcgacagcgttgaagcccaggacgaagccctgaccttcatccgc
caggtgatgccgcagtacgccagcaagatcaagctgtacgaagacagcgtgccgctgttc
aaccgcttccagatcgaaagccagatcgaaaccgccttccagcgcgtggtcgaactgcct
tccggcggctccatcgtcatcgacccgaccgaagccctggtgtccatcgacatcaactcg
gctcgcgccaccaaaggcagcgacatcgaagaaaccgccctgcagaccaacctggaagca
gcggaagaaatcgctcgccaactgcgtctgcgtgatatcggcggcctgattgtcatcgac
ttcatcgacatgaccccagccaagaaccagcgcgccgtggaagaaaaagtccgcgaatgc
ctggaagccgaccgcgcccgcgtgcagatcggccgcatctcgcgcttcggcctgctggaa
atgtcccgtcagcgcctgcgcccttccctgggcgaaagcagcggcatcgtctgcccacgc
tgcaatggcaccggcatcatccgtgacgtcgaatcgctgtccctggcgatcctgcgcctg
atcgaagaagaagccctgaaagaccgcaccgccgaagttcgcgcccaagtgccgattccg
gtcgccgccttcctgctcaacgaaaaacgcaactcgatcaccaagatcgaactgcgcacc
cgtgcccgcatcgtcatcctgccgaacgatcacctcgaaacgccgcacttcgaagtccag
cgtctacgcgatgacagcccggaagccaacatcaaccagtccagctacgaaatcgccgcg
gccgcagccgaagccgaagaagtacagccagccgccgccacccgcaccctggttcgccag
gaagccgcggtgaagaccgcaccggcccgcgccaatgcccctgtgccgaccgaagccgtc
gctccggttgccgctccagccccggttgctgccgagccaagcctgttcaaaggcctggtc
aagtccctggtcagcctgttcgcctccaaggaagagccggccgctccggtcgtggtcgag
aagccggcaaccgagcgccctgcccgcaacaacgaagagcagcgtcgcaacggccgtcaa
cagagccgtaaccgcaacggtcgccgcgacgaagagcgcaagccacgtgaagaacgtgca
ccgcgtgaagagcgcgcaccacgggaagagcgtcaacctcgcgaagtgcgtgaagctcgc
gaagaagtccaaggtgtagcccgcgaagaacgcgcaccacgtgctccgcgcgaagagcgt
caaccacgcgccccacgtgaagaccgcaagccacgtggcgagcgtgaagagcgtgttcgc
gaactgcgcgagcctctggatgccgctccggccgccgccgctgctaccgccgccgttgcc
gttgccgaagaacgcccggctcgtccgccacgggaagagcgccagccgcgtccgccgcgc
gaagagcgtcagccacgcgccgaacaggctcaggccgctgccgccagcgaagaagaagca
ctgccgaacgaagagcaactgcaggaagaaggccaggacaacgccgacggcgaacgtcca
cgccgtcgctcccgcggccagcgtcgtcgcagcaaccgtcgcgagcgtcagcgtgatgcc
aacggcaacgtgatcgagggttcggaagagaacgccgaagagccaagcagcgccgatctg
gccgccggcctcgcggtcactgccgctgttgccagcaccgccatcagcgccaacgctgaa
gcacaagcgcatcagcaagccgaacgcgcgaccgccgctgttgcagagcaggctccgcaa
gcacctgtggtcgaagccactactgaagtggaagcgccggctgctccagctgttgaactg
gccccaatcgaacaggccccagcggccgaagttgctccggttgttgcagagcagcctcag
gttgaagtcgccgccgaacccgccgtgactgtcgaagcacaacctgtggtagccgagcag
cctgtcgcagaacctgcggtccaggcgccggtggttgaggaaacagccatcgagcctgcc
caggaagctccggccccggccgctgaacctgttgccatcgagcagccagtgattgcccag
cagcctgcccaggctgaagagcctgcaccggctgttgcccctgtcgtcaccgaagccccg
gctccagtggttgaagcggctccggtgagcgccctgaccagcaacggtcgcgcaccaaac
gatccgcgcgaagtgcgccgtcgcaagcgtgaagccgagcgtctgcagaaggaagccgag
ctggctgccgctgccgccccggttgaagcggtggctgctgccgagcccgctccggtcgaa
gcgccagtggtggtcgaagccgctccagcgcctgtcgaggcggctgaagcagcacctgcg
ccggtcaccgaacctgtggcagagcaacctgccccggtggtggaagaggcaccgcacaac
gtcgagcacgccgttgagcacgtagcccacaccgaggaaaagcagcacgagcctaaacct
ctcgcctga
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