Pseudomonas sp. Os17: POS17_5737
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Entry
POS17_5737 CDS
T04177
Symbol
rhlE_2
Name
(GenBank) ATP-dependent RNA helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
psos
Pseudomonas sp. Os17
Pathway
psos03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
psos00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
POS17_5737 (rhlE_2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
psos03019
]
POS17_5737 (rhlE_2)
Enzymes [BR:
psos01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
POS17_5737 (rhlE_2)
Messenger RNA biogenesis [BR:
psos03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
POS17_5737 (rhlE_2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
BAQ77431
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All DBs
Position
6402918..6404783
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AA seq
621 aa
AA seq
DB search
MSFASLGLSEALVGAIEAAGYTQPTPVQQRAIPAVLQGRDLMVAAQTGTGKTGGFALPIL
ERLFPNGHPDKSQRHGPRQPRVLVLTPTRELAAQVHDSFKLYARDLKFVSACIFGGVGMN
PQVQAMARGVDVLVACPGRLLDLAGQGSVDLSHVEILVLDEADRMLDMGFVHDVKKVLAR
LPAKRQNLLFSATFSKDITDLAGKLLHNPERIEVTPPNTTVERIEQRVFRLPASHKRSLL
AHLITAGAWEQVLVFTRTKHGANRLAEYLDKHGLSAVAIHGNKSQNARTKALADFKAGDV
RILVATDIAARGLDIDQLPHVVNFELPNVDEDYVHRIGRTGRAGRSGEAISLVAPDEEKL
LKSIERMTKQKIADGDLMGFDASAVEAEKPEVRERPDVRNPRNPRGPRGDGPNGGGGGGG
RKDKGKDKGGKDKPARGERPAREQKPREGTPAREQRQPTPRADRAPDEFLDDDVDNFGNR
ADYVSPYQNKNNQGRGRRPGAPALGAGAGAGNPPRGGGQGRSGSPRNSNGSTTGTAPAKR
SGGPRNGAPRDSQGRRDESRNRRPNRDDQARQEPAVQNPRSNQPKIMHKESKIDRFPTPE
QLDQLPSRPRGEKPALLTRNR
NT seq
1866 nt
NT seq
+upstream
nt +downstream
nt
atgtcctttgcttccctcggtctctccgaggctttagtcggcgccatcgaagccgccggc
tacacccagcctactccggtgcaacagcgggccatccccgccgtgttgcaaggtcgcgat
ctgatggtcgcggcacagacaggtactggtaaaaccggcggtttcgcccttccgatcctg
gagcggttgtttcccaacggtcacccggacaaatcccagcgtcacggcccgcgccaaccc
cgcgtcctggtcctgaccccgactcgcgaactggccgcgcaagtgcatgacagcttcaag
ctgtacgcccgcgacctgaagttcgtcagcgcctgcatcttcggcggcgtcggcatgaac
ccccaagtccaggccatggcccgtggcgtggacgtgctggtggcgtgccccggccgtctg
ctggacctggccggccaaggcagcgtcgacctgtcccacgtggaaatcctcgtgctcgac
gaagccgaccgcatgctcgacatgggcttcgtgcatgacgtgaagaaagtcctcgcgcgc
ctgccggccaagcgccagaacctgctgttctccgcgaccttctccaaggacatcacggac
ctggccggcaagctgctgcacaaccccgagcgcatcgaagtcactccgcccaacaccacg
gtggagcgcatcgagcagcgggtgttccgcctgcccgccagccacaaacgctcgctgctg
gcgcacctgatcaccgccggcgcctgggaacaggtcctggtgttcacccgcaccaagcat
ggcgccaaccgcctggccgagtacctggacaagcacggcctgagcgccgtggcgatccac
ggcaacaagagccagaacgcccgcaccaaggccctggccgacttcaaggccggcgacgtg
cggatcctggtggccaccgatatcgccgctcgcggcctggatatcgaccaattgccccac
gtggtcaacttcgagctgcctaacgtcgacgaagactacgtgcaccgtatcggtcgtacc
ggccgtgccggtcgctcgggcgaggccatctccctggtggccccggacgaagaaaaactg
ctgaaaagcatcgagcgcatgaccaagcagaagatcgccgatggcgacctgatgggcttc
gatgccagcgccgtggaagccgagaagccggaagtgcgcgagcgtccggacgtacgcaac
ccgcgcaatcctcgcggcccacgtggcgacggcccgaacggcggcggtggcggcggtggt
cgcaaggacaagggcaaggacaagggcggcaaagacaagccggcccgtggcgaacgcccg
gcccgcgagcagaagccccgcgaaggcaccccggctcgcgaacagcgccagccgacgccc
cgtgccgatcgggcaccggacgagttcctcgacgacgacgtggacaacttcggtaaccgc
gccgactacgtcagcccctaccagaacaagaacaaccagggccgcggccgccgtccaggg
gctccggccctgggtgcaggcgccggtgccggcaatccgcctcgcggcggcggccagggt
cgctccggtagcccgcgcaacagcaacggcagcaccaccggcaccgcacccgccaagcgc
agcggcggtccacgcaacggcgccccgcgtgacagccagggccgtcgcgacgaatcgcgc
aatcgccggccgaaccgtgacgatcaggcccgccaggagcctgcggtgcagaaccctcgg
agcaaccagccgaagatcatgcacaaagagtccaagatcgatcgtttcccgacgcctgag
caactggaccagttgccaagccgtccacggggcgagaagccggcgctgctgacccgcaat
cgctga
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