Prescottella soli: ABI214_06460
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Entry
ABI214_06460 CDS
T10552
Name
(GenBank) RtcB family protein
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
psow Prescottella soli
Brite
KEGG Orthology (KO) [BR:
psow00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
psow03016
]
ABI214_06460
Enzymes [BR:
psow01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
ABI214_06460
Transfer RNA biogenesis [BR:
psow03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
ABI214_06460
Prokaryotic type
tRNA splicing ligases
ABI214_06460
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-ProteinID:
XBK09365
LinkDB
All DBs
Position
complement(1387653..1388849)
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AA seq
398 aa
AA seq
DB search
MTPTEHGHNLLNFASHIDDGTLAQACETASMPFVYPHVALMPDAHVGKGSAVGTVIPTRG
AVIPAAVGVDIGCGMIAARTQFTLADVERAERQGRTLHALRLRIEHAIPLSPGHYNLTAS
LGKWFAEPKIAELEERAAKDGVDLSHSPKWREQLGSLGGGNHFIELCLDEQDRVWLFLHS
GSRGVGNKIAQKHIAIAQKLCRTWHIELPNRDLAYLAEGAPEFWDYIRELRWAQRFALLN
RAEMMDRFSKLFGEWIGAPVVEAERINSHHNYTEQEEHYGEKVWLTRKGAVNAHEGVAAV
IPGSMGTRSYIVVGKGDARGLCSAPHGAGRRFSRTQARKRFTVDDLARRMKGIEYRHGAA
WVDEIPDAYKDIDVVMDDARDLVDVRHELRQILNVKGT
NT seq
1197 nt
NT seq
+upstream
nt +downstream
nt
gtgacccccaccgagcacggccacaacctgttgaacttcgccagccacatcgacgacgga
accctcgcccaggcttgcgagaccgcctccatgccgttcgtgtacccgcacgtggcgctg
atgcccgacgcccacgtcggcaagggctcggcggtggggacggtgatccccacccgcggt
gcggtgatcccggcggcggtcggcgtggacatcggatgcggaatgatcgctgcgcgaacg
cagttcacgctcgcggacgtcgagcgcgccgagcggcaggggcggaccctgcatgcgctg
cggttgcggatcgaacacgcgatcccgctgtccccggggcactacaacctcaccgcatcg
ctcggaaagtggttcgcggagcccaagatcgccgaactcgaggagcgcgccgcgaaggac
ggcgtcgatctgtctcattccccgaagtggcgcgagcagctggggtccctgggcggcggc
aaccacttcatcgagctgtgcctcgacgagcaggaccgggtgtggctgttcctgcactcc
ggtagccgcggggtggggaacaagatcgcgcagaagcacatcgcgatcgcccagaagctg
tgccggacatggcacatcgagctgccgaaccgggacctcgcctacctggcggagggtgcg
cccgagttctgggattacatccgggaactgcgctgggcgcagcggttcgcgctgctgaac
cgggcagagatgatggaccgcttcagcaagctgttcggtgagtggatcggtgccccggtg
gtcgaggcggagcggatcaactcccaccacaactacaccgagcaggaggagcactacggc
gagaaggtctggctcacccggaagggggcggtgaacgcgcacgagggcgtggcggccgtg
attccgggttcgatggggacccgctcgtacatcgtggtcggcaagggcgacgcccgagga
ctgtgctccgccccgcacggcgccggccgccggttctcccgcacacaggcgcgtaagcgg
ttcacggtcgacgacctggcccggcgcatgaaggggatcgagtaccggcacggtgccgcg
tgggtcgacgagatccccgacgcctacaaggacatcgacgtggtgatggacgacgccagg
gatctcgtggacgtgcggcacgagttgcggcagatcctcaatgtcaaggggacgtag
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