Prescottella soli: ABI214_08210
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Entry
ABI214_08210 CDS
T10552
Name
(GenBank) ATP-dependent DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
psow Prescottella soli
Pathway
psow03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
psow00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
ABI214_08210
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
psow03400
]
ABI214_08210
Enzymes [BR:
psow01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
ABI214_08210
DNA repair and recombination proteins [BR:
psow03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
ABI214_08210
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_C
DNA_ligase_A_M
DNA_primase_S
Motif
Other DBs
NCBI-ProteinID:
XBK09691
LinkDB
All DBs
Position
complement(1742377..1744623)
Genome browser
AA seq
748 aa
AA seq
DB search
MPTRTIDGRRVAVSRLDKVLYPATGTTKGEVIDYYTAIAPAMLPHVVERPVTRKRWPNGV
DEPSFFEKNLAVSAPQWLARHAVHHKDRTVRYPSIDSTAALVWIGQQAALEVHVPQWRFV
DGEPGPATRLVFDLDPGAGAGLPECARVAFAVRDLVATLGWTAYPVTSGSKGIHVYVPLD
RTLAPGGASTVAKKVATTLEQLHPDLVTATMSKSVRGGRVFLDWSQNNAAKTTIAPYSMR
GRTHPTVAAPRLWDELEDPDLRHLRFDEVLERYRRDGDLLADLDAPWDALSEYRRKRDPE
RTPEPIPQTEAEGGEGNSFVIQEHHARRLHYDFRLERDGVMVSWAVPRGVPTSPRENRLA
VHTEDHPLEYASFAGSIPKGEYGGGTVSIWDAGTYEPVKWLDDEVIVRLYGERVQGRFAL
IRTEGDQWLMHLMRDDGDNRDFPRGLRPMLATRSGTAGLDGLDPDEWAFEGKWDGIRLIV
EFDGETLTLRGRAGNDVTDRYPALQSLARTLDGHRVVLDGEVVSLDSAGRTSFTALQAGG
EPRFWAFDIVYLDGVSLLRKRYDDRRRVLDALAAAVDGLVVPPQLTGSVPEVVEQSGDLE
GVVAKRRDSVYLPGKRGSGWIKTKNWLTQEAVIGGWRRGRGGRDGRLGSLLLGIPGGDGL
RYIGRVGTGFSESELDRLGALLAPLERRTSPFVDDVPDADRRETVWVTPKIVGEVRFRDR
TGAGRLRHPSWRGLRDDKTPDDVREESG
NT seq
2247 nt
NT seq
+upstream
nt +downstream
nt
gtgccgacacgcaccatcgacggccgtcgtgtggccgtgagcaggctcgacaaggtgctg
taccccgccacgggcaccaccaagggcgaggtgatcgactactacaccgcgatcgcgccc
gcgatgctcccgcacgtcgtcgagcgcccggtcacccgcaagcgctggccgaacggcgtc
gacgagccgtcgttcttcgagaagaacctcgcagtctcggcgccgcagtggctcgcccgg
cacgccgtccaccacaaggaccgcaccgtgcgctatccgagcatcgactccacggccgcg
ctcgtgtggatcggtcagcaggccgcgctggaagtgcatgtcccgcaatggcgattcgtc
gacggtgagcccgggccggcgacccggctggtgttcgacctcgacccgggcgcgggggcc
ggcctgcccgagtgcgcgcgggtggcgttcgcggtacgcgatctcgtggcgacgctgggg
tggacggcgtacccggtgacgagcggcagcaagggcatccacgtctacgtgcccctggac
cggacgctggcgccgggcggcgcgtcgaccgtggccaagaaggtggcgacgaccctcgaa
cagctccatcccgatctggtgaccgcgacgatgtcgaagtcggtgcgcggcgggcgggtc
ttcctcgactggagccagaacaacgccgccaagaccacgatcgcgccgtactcgatgcgc
gggcgcacccatccgaccgtcgcggcgccgcggctctgggacgaactcgaggatccggac
ctgcggcacctgcgattcgacgaggtgctcgagcggtaccgacgggacggggatctgctg
gccgatctcgacgcgccgtgggacgccctgtccgaataccgtcgcaagcgcgatcccgaa
cgcacgcccgagccgattccgcagacggaagccgaaggcggtgagggcaattcgttcgtc
atccaggagcatcacgcccggcgcctgcactacgacttccgactcgaacgcgacggcgtc
atggtctcgtgggccgttccgcgcggcgtcccgacgtccccgcgggagaaccgcctggcc
gtgcacaccgaggaccatcccctcgagtacgcgagcttcgcgggctccatcccgaagggg
gagtacggcggcggaaccgtgagcatctgggacgccggcacgtacgagccggtcaagtgg
ctcgacgacgaggtgatcgtccggctgtacggcgagcgggtgcagggccggttcgcgctc
atccgcaccgagggcgaccagtggttgatgcacctgatgcgggacgacggcgacaaccgt
gacttcccgcgggggctgcggccgatgctcgcgaccaggagcggcactgccggcctcgac
ggtctcgatccggacgagtgggcgttcgaggggaaatgggacggaatccgcttgatcgtc
gagttcgacggcgagaccctcaccctgcgcggccgcgcaggcaacgacgtgaccgaccgg
tatccggcactgcaatcgctcgctcgcaccctcgacgggcaccgggtggtgctggacggg
gaggtggtcagcctcgacagcgcagggcggacgagtttcacggcgctgcaggccggtggc
gaaccccggttctgggcgttcgacatcgtgtatctggacggggtgtcgctgctgcgcaag
cggtacgacgaccgccgccgcgtcctcgacgcgctcgccgccgcggtggacggactcgtc
gtcccgccgcagctgacgggttcggtgcccgaggtcgtcgaacagagcggtgatctcgag
ggcgtcgtggcgaagcgccgcgattcggtctacctgccgggcaagcgcggatcgggatgg
atcaagaccaagaactggctcacccaggaggcggtcatcggtgggtggcgtcgcggccgc
ggcggccgcgacgggcgcctcggctcgttgctgctggggatccccggcggtgacggcctg
cgctacatcggacgggtcggcaccgggttcagcgaatcggaactcgaccgcctgggcgca
ctgctcgccccgctcgaacgacggaccagtcccttcgtcgacgacgtccccgacgccgat
cgccgcgagaccgtgtgggtgaccccgaagatcgtgggggaggtgcggttccgggaccgc
accggcgccgggcggctgcgacacccgagctggcggggactgcgcgacgacaagaccccc
gacgacgtgcgggaggagtcgggctga
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