KEGG   Prescottella soli: ABI214_08210
Entry
ABI214_08210      CDS       T10552                                 
Name
(GenBank) ATP-dependent DNA ligase
  KO
K01971  bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
psow  Prescottella soli
Pathway
psow03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:psow00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    ABI214_08210
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:psow03400]
    ABI214_08210
Enzymes [BR:psow01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     ABI214_08210
DNA repair and recombination proteins [BR:psow03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     ABI214_08210
SSDB
Motif
Pfam: LigD_Prim-Pol LigD_N DNA_ligase_A_C DNA_ligase_A_M DNA_primase_S
Other DBs
NCBI-ProteinID: XBK09691
LinkDB
Position
complement(1742377..1744623)
AA seq 748 aa
MPTRTIDGRRVAVSRLDKVLYPATGTTKGEVIDYYTAIAPAMLPHVVERPVTRKRWPNGV
DEPSFFEKNLAVSAPQWLARHAVHHKDRTVRYPSIDSTAALVWIGQQAALEVHVPQWRFV
DGEPGPATRLVFDLDPGAGAGLPECARVAFAVRDLVATLGWTAYPVTSGSKGIHVYVPLD
RTLAPGGASTVAKKVATTLEQLHPDLVTATMSKSVRGGRVFLDWSQNNAAKTTIAPYSMR
GRTHPTVAAPRLWDELEDPDLRHLRFDEVLERYRRDGDLLADLDAPWDALSEYRRKRDPE
RTPEPIPQTEAEGGEGNSFVIQEHHARRLHYDFRLERDGVMVSWAVPRGVPTSPRENRLA
VHTEDHPLEYASFAGSIPKGEYGGGTVSIWDAGTYEPVKWLDDEVIVRLYGERVQGRFAL
IRTEGDQWLMHLMRDDGDNRDFPRGLRPMLATRSGTAGLDGLDPDEWAFEGKWDGIRLIV
EFDGETLTLRGRAGNDVTDRYPALQSLARTLDGHRVVLDGEVVSLDSAGRTSFTALQAGG
EPRFWAFDIVYLDGVSLLRKRYDDRRRVLDALAAAVDGLVVPPQLTGSVPEVVEQSGDLE
GVVAKRRDSVYLPGKRGSGWIKTKNWLTQEAVIGGWRRGRGGRDGRLGSLLLGIPGGDGL
RYIGRVGTGFSESELDRLGALLAPLERRTSPFVDDVPDADRRETVWVTPKIVGEVRFRDR
TGAGRLRHPSWRGLRDDKTPDDVREESG
NT seq 2247 nt   +upstreamnt  +downstreamnt
gtgccgacacgcaccatcgacggccgtcgtgtggccgtgagcaggctcgacaaggtgctg
taccccgccacgggcaccaccaagggcgaggtgatcgactactacaccgcgatcgcgccc
gcgatgctcccgcacgtcgtcgagcgcccggtcacccgcaagcgctggccgaacggcgtc
gacgagccgtcgttcttcgagaagaacctcgcagtctcggcgccgcagtggctcgcccgg
cacgccgtccaccacaaggaccgcaccgtgcgctatccgagcatcgactccacggccgcg
ctcgtgtggatcggtcagcaggccgcgctggaagtgcatgtcccgcaatggcgattcgtc
gacggtgagcccgggccggcgacccggctggtgttcgacctcgacccgggcgcgggggcc
ggcctgcccgagtgcgcgcgggtggcgttcgcggtacgcgatctcgtggcgacgctgggg
tggacggcgtacccggtgacgagcggcagcaagggcatccacgtctacgtgcccctggac
cggacgctggcgccgggcggcgcgtcgaccgtggccaagaaggtggcgacgaccctcgaa
cagctccatcccgatctggtgaccgcgacgatgtcgaagtcggtgcgcggcgggcgggtc
ttcctcgactggagccagaacaacgccgccaagaccacgatcgcgccgtactcgatgcgc
gggcgcacccatccgaccgtcgcggcgccgcggctctgggacgaactcgaggatccggac
ctgcggcacctgcgattcgacgaggtgctcgagcggtaccgacgggacggggatctgctg
gccgatctcgacgcgccgtgggacgccctgtccgaataccgtcgcaagcgcgatcccgaa
cgcacgcccgagccgattccgcagacggaagccgaaggcggtgagggcaattcgttcgtc
atccaggagcatcacgcccggcgcctgcactacgacttccgactcgaacgcgacggcgtc
atggtctcgtgggccgttccgcgcggcgtcccgacgtccccgcgggagaaccgcctggcc
gtgcacaccgaggaccatcccctcgagtacgcgagcttcgcgggctccatcccgaagggg
gagtacggcggcggaaccgtgagcatctgggacgccggcacgtacgagccggtcaagtgg
ctcgacgacgaggtgatcgtccggctgtacggcgagcgggtgcagggccggttcgcgctc
atccgcaccgagggcgaccagtggttgatgcacctgatgcgggacgacggcgacaaccgt
gacttcccgcgggggctgcggccgatgctcgcgaccaggagcggcactgccggcctcgac
ggtctcgatccggacgagtgggcgttcgaggggaaatgggacggaatccgcttgatcgtc
gagttcgacggcgagaccctcaccctgcgcggccgcgcaggcaacgacgtgaccgaccgg
tatccggcactgcaatcgctcgctcgcaccctcgacgggcaccgggtggtgctggacggg
gaggtggtcagcctcgacagcgcagggcggacgagtttcacggcgctgcaggccggtggc
gaaccccggttctgggcgttcgacatcgtgtatctggacggggtgtcgctgctgcgcaag
cggtacgacgaccgccgccgcgtcctcgacgcgctcgccgccgcggtggacggactcgtc
gtcccgccgcagctgacgggttcggtgcccgaggtcgtcgaacagagcggtgatctcgag
ggcgtcgtggcgaagcgccgcgattcggtctacctgccgggcaagcgcggatcgggatgg
atcaagaccaagaactggctcacccaggaggcggtcatcggtgggtggcgtcgcggccgc
ggcggccgcgacgggcgcctcggctcgttgctgctggggatccccggcggtgacggcctg
cgctacatcggacgggtcggcaccgggttcagcgaatcggaactcgaccgcctgggcgca
ctgctcgccccgctcgaacgacggaccagtcccttcgtcgacgacgtccccgacgccgat
cgccgcgagaccgtgtgggtgaccccgaagatcgtgggggaggtgcggttccgggaccgc
accggcgccgggcggctgcgacacccgagctggcggggactgcgcgacgacaagaccccc
gacgacgtgcgggaggagtcgggctga

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