Prescottella soli: ABI214_23610
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Entry
ABI214_23610 CDS
T10552
Name
(GenBank) DEAD/DEAH box helicase
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
psow Prescottella soli
Pathway
psow03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
psow00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
ABI214_23610
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
psow03019
]
ABI214_23610
03400 DNA repair and recombination proteins [BR:
psow03400
]
ABI214_23610
Enzymes [BR:
psow01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
ABI214_23610
Messenger RNA biogenesis [BR:
psow03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
ABI214_23610
DNA repair and recombination proteins [BR:
psow03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
ABI214_23610
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
RecQ_Zn_bind
KORA
UPRTase
AAA_22
Motif
Other DBs
NCBI-ProteinID:
XBK07879
LinkDB
All DBs
Position
complement(5080243..5082339)
Genome browser
AA seq
698 aa
AA seq
DB search
MTTATTADLRDEAERLLRELAGPDARLREDQWTAIEALVVGRRRALVVQRTGWGKSAVYF
IAAKLLRAHGHGPTVIVSPLLALMRNQVASAERAGVRAATINSGNVTEWDEIHQRVAARD
LDVLLVSPERLNNPDFRDQVLPSLAADAGLVVVDEAHCVSDWGHDFRPDYRRIRTLVEDL
GDGIPVLATTATANDRVVSDVATQLGVGGAETLVLRGTLERDSLSMSVVRIAEATQRAAW
LAEHLDELPGSGIIYTLTVSAARDLASLLADRGHQVAAYTGQTDAAEREVLEHDLLNNRV
KALVATSALGMGFDKPDLGFVVHLGAPSSPISYYQQVGRAGRSTDSAEVVLLPGHEDRQI
WSYFASVSFPREHIVRKVIDVLDTERPQSTMALEPLVELNRTRLELVLKVLDVDGAVRRV
RGGWVATGQPWTYDADRYGRLEVAREAEQQAMLEYERTDECRMTFLRRQLDDPGLDGDSR
CGRCDNCAGPKYSADVAAATLADTRQRLERPGIDLPPRKQWPTGMAKLGISLSGKITDGA
EPGRVLGRLSDLGWGQRLRTLLDGPDAAVPDAIVDACIKVLAAWDWTERPGSVMCVESPT
HPLLMRSLTGRLAQVGRLSDLGVLHERPGHPPVSAANSAYRVAGLADAWEAPDLSGLDRP
VLLLDAVTDTGWTLTMAARTLRRAGASSVLPFALATPK
NT seq
2097 nt
NT seq
+upstream
nt +downstream
nt
atgacgaccgcgaccacagcagatctccgtgacgaggccgaacggttgctcagggaactc
gcggggccggacgcccggctgcgcgaggaccagtggacggcgatcgaggcgctggtcgtc
ggccgacgtcgggcgctcgtcgtgcagcgcaccggctggggcaagtccgcggtgtacttc
atcgcggcgaagctcctgcgggcgcacggacacgggcccaccgtcatcgtgtcgcccctg
ttggcgctgatgcgcaaccaggtggcctccgccgagcgggccggcgtccgcgccgcgacc
atcaactcgggaaacgtcaccgagtgggacgagatccaccagcgcgtggccgcgcgcgat
ctggacgtgctgctggtgagccccgagcggctcaacaaccccgacttccgcgaccaggtg
ctgccgtccctcgccgccgacgccggcctcgtcgtggtcgacgaggcccactgtgtctcc
gactgggggcacgacttccgccccgactaccgccggatccgcaccctcgtcgaggacctc
ggcgacggcatcccggtgctggcgaccaccgcgaccgcgaacgaccgcgtcgtctccgac
gtcgccacccaactcggtgtcggcggcgccgagaccctcgtgctgcgcggcaccctcgag
cgcgattcgctgagcatgtcggtggtgcggatcgcggaggcgacgcagcgcgcggcgtgg
ctcgccgagcatctcgacgaactcccgggctcgggcatcatctacacgctcaccgtctcg
gccgcgcgcgacctcgcgagcctgctcgccgaccgcggtcaccaggtggccgcgtacacc
ggccagaccgacgccgccgaacgcgaggtcctcgagcacgatctgctgaacaaccgggtc
aaggcgctggtcgcgacctccgcgctcggcatgggtttcgacaagcccgacctcggattc
gtcgtgcacctgggtgcaccgtcgtcgccgatctcgtactaccagcaggtgggccgtgcc
ggacgctccaccgacagcgccgaggtggtgctcctgcccggtcacgaggaccggcagatc
tggagctacttcgcgtcggtctccttcccgcgcgaacacatcgtccgcaaggtcatcgac
gtcctcgacaccgagcgtccgcagtcgacgatggcgctcgaaccactcgtcgagctgaac
cgcacacgcctcgaactcgtactgaaggtgctggacgtggacggcgccgtccggcgtgtc
cgcggcggctgggtcgccaccgggcagccgtggacgtacgacgccgaccgctacggccga
ctcgaggtcgcgcgcgaggcggaacagcaggcgatgctcgaatacgagcgcaccgacgag
tgccgaatgacgttcctgcgccgccaactcgacgatcccgggctcgacggcgacagccgc
tgcgggcgctgcgacaactgcgccggcccgaagtacagcgccgacgtcgccgccgcgacg
ctcgccgacacccgtcagcgactcgagcgacccggcatcgacctgccaccgcgcaagcag
tggccgacgggcatggcgaagctcggaatcagcctgtccggcaagattaccgacggcgcg
gagcccggccgcgtgttgggccggctgtcggatctgggttggggacagcgcctcaggaca
ctactcgacggccccgacgccgccgtgccggacgcgatcgtcgacgcctgcatcaaagtg
ctcgcggcatgggactggaccgagcgacccggttcggtgatgtgcgtggaatcgcccacc
catccgctcctgatgcgttcgctgaccggtcgactcgcacaggtgggccgactgtccgac
ctgggtgtgctccacgagcggcccggccatcccccggtctcggccgcgaactccgcctac
cgcgtcgcgggcctggcggatgcgtgggaggccccggatctgtccgggctcgatcgtccg
gtgctgctgctcgacgcggtcaccgacaccggctggacgctgacgatggcggcccggacc
ttgcggcgggcaggggcatcctctgtccttcccttcgctctcgccacacccaagtga
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