Pseudomonas savastanoi pv. phaseolicola 1448A: PSPPH_1547
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Entry
PSPPH_1547 CDS
T00266
Symbol
rnd
Name
(GenBank) ribonuclease D
KO
K03684
ribonuclease D [EC:
3.1.13.5
]
Organism
psp
Pseudomonas savastanoi pv. phaseolicola 1448A
Brite
KEGG Orthology (KO) [BR:
psp00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
psp03016
]
PSPPH_1547 (rnd)
Enzymes [BR:
psp01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.5 ribonuclease D
PSPPH_1547 (rnd)
Transfer RNA biogenesis [BR:
psp03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
PSPPH_1547 (rnd)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A_exo1
HRDC
RNAseD_HRDC_C
Motif
Other DBs
NCBI-ProteinID:
AAZ35625
UniProt:
Q48LC6
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All DBs
Position
1800485..1801618
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AA seq
377 aa
AA seq
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MAIDIHWIRDDDSLARHCAEWQLLPFVALDTEFMRVDTFYPIAALLQIGDGQSAWLIDPL
LINDWQPLSALLENPDVIKVVHACSEDLEVLLRLTGSLPVPLFDTQLAAAYLNLGFSMGY
SRLVQEVLNIDLPKGETRSDWLQRPLSETQISYAAEDAVHLAELFSILRPRLSDDKYAWL
LDDGAELVANLRREVDPYEVYREAKLAWKLSRAQLAVLRELCAWREREARARNLPRNRIV
REHSLWPLAKTQPDNLAALGRIEDMHPRTVRHDGEFLLELIKTAGTLPPEQWPPALPEPL
PIDAAGSIKRLRAIGQQYAEQLDMAPELMLRKKTLEALLKSGYPDGPYQLPDSLRGWRRE
LMGQALLDSLATPGEQS
NT seq
1134 nt
NT seq
+upstream
nt +downstream
nt
gtggccatcgatattcactggattcgcgacgacgacagcctcgcccggcattgcgcagaa
tggcagttgctgccttttgtcgcgctcgacaccgagtttatgcgggtcgatactttttat
ccgatagcagcgctactgcagattggcgacgggcaaagcgcctggcttattgatcctttg
ctgatcaacgactggcagccgctgtctgcgttgctcgaaaaccccgacgtcatcaaggta
gtgcacgcgtgcagcgaggacctcgaagttttgctgcgtctgactggcagcctgccggtg
ccgttgtttgatacccagttggcagccgcttacctgaacctcggtttttccatgggctat
tcgcgtctggtgcaggaggtcctcaacatcgacctgcccaagggcgaaacccgttctgac
tggctgcaacgtccgctgtcggaaacgcagatcagctatgccgctgaagatgcagtgcac
cttgccgagcttttctccatcctgcgcccgcgtttgtccgatgacaaatacgcctggctg
ctggatgacggtgccgaactggtcgccaacctgcgccgcgaagttgacccgtacgaggtg
taccgtgaggccaaactggcctggaaactgtcccgtgcccagttggcggtgctgcgtgag
ttgtgtgcctggcgtgagcgcgaggcgcgcgcccgcaacctgccgcgcaaccgcattgtg
cgtgagcactcgctgtggccattggccaagacgcagccggataacctcgctgcactgggg
cgtatcgaagacatgcacccgcgcaccgttcgccatgacggcgagtttctgcttgagctg
ataaagaccgcaggcacgcttccgccagaacagtggcctcctgcattgcctgagccactg
cccattgatgcggccgggtcgatcaagcgtctgcgtgcaatcggtcagcaatacgccgag
caactggacatggccccggagttgatgctgcgcaagaagactctcgaagcgctgctcaag
agcggctaccccgacggtccttaccaattgcccgactcgctgcgtggctggcgtcgcgag
ttgatgggtcaggcgctgctggacagcctggccacccccggagaacagtcttga
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