Pseudomonas savastanoi pv. phaseolicola 1448A: PSPPH_2402
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Entry
PSPPH_2402 CDS
T00266
Name
(GenBank) DNA topoisomerase, type I, putative
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
psp
Pseudomonas savastanoi pv. phaseolicola 1448A
Brite
KEGG Orthology (KO) [BR:
psp00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
psp03032
]
PSPPH_2402
03400 DNA repair and recombination proteins [BR:
psp03400
]
PSPPH_2402
Enzymes [BR:
psp01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
PSPPH_2402
DNA replication proteins [BR:
psp03032
]
Prokaryotic type
DNA Topoisomerases
PSPPH_2402
DNA repair and recombination proteins [BR:
psp03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
PSPPH_2402
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_I
Top1B_N_bact
Motif
Other DBs
NCBI-ProteinID:
AAZ33128
UniProt:
Q48J30
LinkDB
All DBs
Position
complement(2778807..2779877)
Genome browser
AA seq
356 aa
AA seq
DB search
MPDSTAISQPASDLHYVDDTQPGLTRKVLRGKFAYFNIEGKRIKDESEIKRINALAVPPA
YTDVWICADPMGHLQATGRDARGRKQYRYHPRWREIRDQDKYSRLIEFGHALPKVRKQIE
AQLAQPGMGREKVMATVISLLDATLIRIGNSQYAKENRSYGLTTLRNKHVEVKGGQILFE
FRGKSGVEHKVSVKDRRLANVIKRCMELPGQNLFQYLDEDGVRHAVTSSDINAYLQSLTG
SDFTAKDYRTWAASALALATLQKLHWEPEADAKRHIVDMVKAVSKQLGNTPAICRKCYIH
PAVLEGFLLGNLAKLPRSRQRKGLRLEEVALASYLRLLADKVEAVVSDAVVKESKA
NT seq
1071 nt
NT seq
+upstream
nt +downstream
nt
atgcctgactcgactgccatcagccagcccgccagtgacctgcattatgtagacgacact
cagccgggccttacgcgcaaggtactgcgcggcaaattcgcctacttcaacattgagggt
aaacgcatcaaggacgagtcggagatcaagcgcatcaacgcgctggcagtcccgcccgcc
tacaccgatgtgtggatttgtgccgacccgatgggccacctgcaggctaccggacgtgac
gcacgcggccgcaaacaataccgctaccacccgcgctggcgcgagatacgcgaccaggac
aaatactcgcgcctgatagagttcggtcatgcgctgcccaaggttcgcaagcagatagaa
gcacaactcgcgcagccgggtatgggccgggaaaaggtcatggcgacggtcatttcattg
ctggatgcgacgctgatccgcatcggcaacagccagtacgccaaggaaaaccgctcatac
ggcctgaccacgctgcgcaacaagcatgtcgaggtaaagggcggccagatcctctttgaa
ttccggggtaaaagcggcgttgaacacaaggtcagcgtcaaggaccggcgcttggccaat
gtgatcaagcgttgcatggaattgccggggcagaatctgtttcaatatctggacgaagat
ggcgtacgccacgcagtgacgtcatccgatatcaacgcctacctgcaaagcctcaccggc
tcggatttcaccgccaaggattaccggacctgggcagcgagtgcgctggcgctcgcgacg
ttgcagaaactgcattgggagccggaggccgacgccaagcggcacatcgtcgatatggtc
aaggcggtctcgaaacaactgggaaacacccctgccatctgccgaaaatgctacatccac
cccgcagtactggaaggcttcctgctcggcaacctggccaaacttccccgctcccggcaa
cgcaaaggcctgcgcctggaggaagtcgccctggcgagctacctgcgattactggctgac
aaggtcgaggctgtagtgagcgatgcggtggtgaaagagagcaaagcctga
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