Pseudomonas savastanoi pv. phaseolicola 1448A: PSPPH_3634
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Entry
PSPPH_3634 CDS
T00266
Name
(GenBank) ATP-dependent RNA helicase, DEAD box family
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
psp
Pseudomonas savastanoi pv. phaseolicola 1448A
Pathway
psp03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
psp00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PSPPH_3634
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
psp03019
]
PSPPH_3634
03009 Ribosome biogenesis [BR:
psp03009
]
PSPPH_3634
Enzymes [BR:
psp01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
PSPPH_3634
Messenger RNA biogenesis [BR:
psp03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
PSPPH_3634
Ribosome biogenesis [BR:
psp03009
]
Prokaryotic type
rRNA helicases
PSPPH_3634
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
BscB_a-b
Motif
Other DBs
NCBI-ProteinID:
AAZ33964
UniProt:
Q48FQ8
LinkDB
All DBs
Position
complement(4178536..4180248)
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AA seq
570 aa
AA seq
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MGLCGCTRGRPMTQEIGGFAALELHPNIVAAVVATGYEEPSAIQQQSIPIILAGHDMIGQ
AQTGTGKTAAFALPILHRIDPSKREPQALILAPTRELALQVATAFETYAKQMPGVTVVAV
YGGAPMGPQLKAIRNGAQIVVATPGRLCDHLRRDEKVLATVNHLVLDEADEMLKLGFMDD
LEVIFKAMPETRQTVLFSATLPQSIRAIAERHLRDPKHVKIQTKTQTVTAIEQAHLLVHA
DQKTSAVLSLLEVEDFDALIMFVRTKQATLDLASALEAKGYKAAALNGDIAQNQRERVID
SLKDGRLDIVVATDVAARGLDVPRITHVFNVDMPYDPESYVHRIGRTGRAGREGRALLLV
TPRERRMLQVIERVTGQKVAEVRLPDAQAVLDARIKKLTNSLSPLVADAESTHGDLLDRL
TADIGCSPRALAAALLRKATNGQALTLAAIERERPLVPNNAPRGDRPERSGSSDRGDRPE
RERRAPVPLAEGRARCRTALGARDGIAAKNLLGAILNEGGLAREAIGRIQVRDSFSLVEL
PEDGLERLLTKLKDTRVAGKQLKLRRYRED
NT seq
1713 nt
NT seq
+upstream
nt +downstream
nt
atgggtctttgcggatgcactagaggcagacccatgacccaggaaatcggcggcttcgcc
gctctcgaacttcatccaaatatcgttgcagcagtcgtcgccactggctacgaagagcct
tcggccattcagcagcaatcgatcccgattattctcgccggtcacgacatgattggtcag
gcgcaaaccggtacgggtaaaaccgccgcgttcgcactgcctatcctgcatcgtatcgac
ccgagcaagcgcgagccgcaagcactgatcctggccccgacccgcgaactggcacttcag
gttgccaccgcgttcgagacctacgccaaacaaatgccgggcgtgaccgttgtagcggtc
tacggcggcgcgccaatgggcccgcagctcaaggccatccgcaacggcgcacaaatcgtt
gtcgccaccccgggccgtctctgcgaccacctgcgtcgtgacgagaaagtcctggcaacc
gtgaaccatctggttctcgatgaagcggacgaaatgctcaagctgggcttcatggacgac
ctcgaagtcatcttcaaggccatgcctgaaacccgccagaccgtgctgttctcggcaacg
ctgccacagtcgatccgtgccatcgccgagcgccatctgcgcgatccgaagcacgtcaag
atccagaccaagacccagaccgttaccgcgatcgagcaggctcacctgctggttcacgct
gaccagaagacctccgctgtactgagcctgctggaagtcgaagacttcgacgccctgatc
atgttcgtccgcaccaagcaggcgaccctggacctggcaagcgcccttgaagccaaaggc
tacaaggctgctgcactgaacggtgacatcgctcagaaccagcgcgagcgcgttatcgat
tccctcaaggatggccgtctggacatcgttgtagcgaccgatgttgctgcccgtggtctt
gacgttccgcgtattacccacgtattcaacgtggacatgccttacgatccagagtcctac
gttcaccgtatcggccgtaccggtcgtgccggtcgcgaaggtcgtgcactgctgctggta
actcctcgcgagcgccgtatgctgcaggtgatcgagcgtgtaaccggtcagaaggttgct
gaagtccgcctgccggatgcccaggccgttctggatgcccgcatcaagaaactgaccaac
agcctgtcgccactggttgccgatgccgaatcgactcacggcgatctgctggatcgtctg
actgccgacatcggttgcagcccgcgtgcccttgctgctgcactgctgcgcaaggctacc
aacggtcaggctctgaccctggcagctatcgagcgcgagcgcccgctggttccgaacaac
gctccacgcggtgatcgtccagaacgtagcggcagcagcgatcgcggtgatcgtcctgag
cgtgagcgtcgtgcgccggtcccgctggccgaaggccgtgctcgttgccgtaccgcgctg
ggtgcgcgtgatggtatcgctgccaagaacctgctgggtgccatcctcaacgaaggcggc
ctggcccgcgaagctatcggccgcatccaggtgcgtgacagcttcagcctggtcgagctg
ccggaagatggtcttgagcgtctgctgaccaagctcaaggacacccgtgttgctggcaag
cagctcaagctgcgtcgctatcgcgaagactga
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