Pseudomonas savastanoi pv. phaseolicola 1448A: PSPPH_4354
Help
Entry
PSPPH_4354 CDS
T00266
Name
(GenBank) ATP-dependent RNA helicase rhlE, putative
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
psp
Pseudomonas savastanoi pv. phaseolicola 1448A
Pathway
psp03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
psp00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PSPPH_4354
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
psp03019
]
PSPPH_4354
Enzymes [BR:
psp01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
PSPPH_4354
Messenger RNA biogenesis [BR:
psp03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
PSPPH_4354
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
AAA_22
Cas3-like_C_2
ERCC3_RAD25_C
CMS1
Motif
Other DBs
NCBI-ProteinID:
AAZ34579
UniProt:
Q48DS1
LinkDB
All DBs
Position
complement(4976879..4978231)
Genome browser
AA seq
450 aa
AA seq
DB search
MNFSYGISMTFASLGLIEPLLRALEALGYQTPTPVQTQAIPPVLAGRDLMAAAQTGTGKT
AGFALPLLQRLTMEGPKVAPNCVRALVLAPTRELADQVHESIRQYAEHLPLSTYAAYGGV
SINPQMMKLRKGVDVLVATPGRLLDLHRQNAVKFSQLQTLILDEADRMLDLGFAEELRGI
YAVLPKQRQTLLFSATFSDEIRLLAAQMLNDPLTIEVSPRNVAASSVKQWVVTVDKKRKA
DLFIHLMKKHRWGQVLVFAKTRVGVDQLVDRLQGLGLNADGIHGDKPQATRQRALDRFKS
NEVKILVATDVAARGLDIDDLPTVVNLDLPIVAEDYIHRIGRTGRAGLTGEAISLVCADE
VELLSAIEVLTRQTLERKEEQDFEPEHRVPTTDASGQILKKPKKPKKPKVSGSKRNLGKW
VDSGESEPAPAVKPVRKVPVFNTGPRKKKP
NT seq
1353 nt
NT seq
+upstream
nt +downstream
nt
ttgaatttttcctacggtatttccatgacattcgcctctctcggcctgatcgaacccttg
ctgcgcgccctcgaagcgctcggttaccagactccgacgcctgtacagacccaggcaatt
cctccggtactggcgggccgcgatctgatggcagctgcccagaccggcaccggcaagacc
gcaggttttgccttgccgctgttgcagcgcctgaccatggaagggccgaaagtcgcgcct
aattgcgttcgcgcgctggtattggccccgacccgcgaactggccgatcaggttcacgaa
agcattcgtcagtatgccgaacacctgccgttgagcacttacgcagcttacggtggcgtg
agcatcaacccgcaaatgatgaagctgcgcaagggcgtggacgtgctggttgcgacaccg
ggacgtctgctcgacctgcatcgtcagaatgcagtcaagttctcccagttgcagaccctg
atcctcgatgaagccgaccgcatgcttgatctgggctttgccgaggaattgcgtggcatc
tacgcggtactgcccaagcagcgccagaccttgctgttctccgcgaccttttccgacgaa
attcgtctgctggccgctcagatgctgaatgatccgctgaccatcgaggtcagcccgcgc
aatgtggcggcgtcgtcggtcaagcaatgggttgtgaccgtggacaagaagcgcaaggct
gatctgttcatccacctgatgaaaaaacatcgctggggccaggtgctggtgttcgccaag
acccgggttggcgttgatcaactggtggaccgtttgcaggggctgggtctgaacgctgat
ggcattcacggcgacaagccgcaggctactcgccagcgtgcgctggaccgcttcaagagc
aatgaagtgaagattctggttgccaccgacgtggcggctcgtggtctggatatcgatgat
ctgccgacggtcgtcaacctggacctgccgattgtggccgaggattacatccaccgtatt
ggccgcaccggccgggcgggcctgacgggcgaggcgatctcgctggtgtgtgctgatgaa
gtcgaactgctgtcggccatcgaagtgctgacccgccagacgcttgagcgcaaggaagaa
caggactttgagcctgagcaccgggtgccgactacagatgccagcggccagatcctgaaa
aagcccaagaaaccgaaaaagcccaaggtctcgggcagcaaacgtaacctgggcaaatgg
gtcgacagcggcgaatcagagcctgcgccagcggtcaaacccgtacgtaaagtgccggtc
ttcaacaccggcccgcgcaagaagaagccttga
DBGET
integrated database retrieval system
