Pseudomonas savastanoi pv. phaseolicola 1448A: PSPPH_4598
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Entry
PSPPH_4598 CDS
T00266
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase, beta' subunit
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
psp
Pseudomonas savastanoi pv. phaseolicola 1448A
Pathway
psp03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
psp00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
PSPPH_4598 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
psp03021
]
PSPPH_4598 (rpoC)
03400 DNA repair and recombination proteins [BR:
psp03400
]
PSPPH_4598 (rpoC)
Enzymes [BR:
psp01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
PSPPH_4598 (rpoC)
Transcription machinery [BR:
psp03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
PSPPH_4598 (rpoC)
DNA repair and recombination proteins [BR:
psp03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
PSPPH_4598 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Peptidase_M23
DUF3150
Biotin_lipoyl
Motif
Other DBs
NCBI-ProteinID:
AAZ37541
UniProt:
Q48D30
LinkDB
All DBs
Position
complement(5232126..5236325)
Genome browser
AA seq
1399 aa
AA seq
DB search
MKDLLNLLKNQGQVEEFDAIRIGLASPEMIRSWSFGEVKKPETINYRTFKPERDGLFCAK
IFGPVKDYECLCGKYKRLKHRGVICEKCGVEVALAKVRRERMAHIELASPVAHIWFLKSL
PSRIGLLMDMTLRDIERVLYFESYVVIDPGMTTLEKGQLLNDEQYFEALEEFGDDFDARM
GAEAVRELLHAIDLEHEIGRLREEIPQTNSETKIKKLSKRLKLMEAFQGSGNLPEWMVLT
VLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLSAPDIIVRNEKRMLQ
EAVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPT
LRLHQCGLPKKMALELFKPFIFGKLEMRGLATTIKAAKKMVERELPEVWDVLAEVIREHP
VLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEA
RALMMSTNNILSPANGEPIIVPSQDVVLGLYYMTREAINAKGEGRVFADLQEVDRVFRAG
EAALHAKVKVRIHETVNDRDGGSVKNTRIVDTTVGRALLFQVVPAGLSYDVVNQPMKKKA
ISKLINQCYRVVGLKETVIFADQLMYTGFAYSTISGVSIGVNDFVIPDEKARIIDAATEE
VKEIESQYASGLVTQGEKYNKVIDLWSKANDEVSKAMMSNLSKEKVIDRHGVEVDQESFN
SMYMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLSVLQYFISTHGAR
KGLADTALKTANSGYLTRRLVDVAQDLVVTEVDCGTEHGLLMTPHIEGGDVVEPLGERVL
GRVIARDVFKPGTEDVIVPAGTLVDEKWVEFIELNSIDEVIVRSPISCETRYGICAKCYG
RDLARGHQVNIGEAVGVIAAQSIGEPGTQLTMRTFHIGGAASRTSAADSVQVKNGGTVRL
HNLKHVERVDGHLVAVSRSGELAIADDFGRERERYKLPYGAVISVKEGDKVDAGSIVAKW
DPHTHPIVTEMKGTVTYVGMEEGITIKRQTDELTGMTNIEVLDAKDRPAAGKDIRPAVKM
VGLDGKDLLLPGTDVPAQYFLPANALVGVADGAQIAIGDVIARIPQETSKTRDITGGLPR
VADLFEARRPKEASILAEVSGTIAFGKETKGKRRLVITPNDGSDPYEELIPKWRHLNVFE
GEQVNRGEVISDGPSDPHDILRLLGVSALAKYIVNEIQDVYRLQGVKINDKHIETILRQM
LRKVEIAESGDSSFIKGDQMELTHVLVENERLSTEDKFVSKFTRVLLGITKASLSTESFI
SAASFQETTRVLTEAAVTGKRDYLRGLKENVVVGRLIPAGTGLAYHSERKRRREMDKPTR
VSASEVEAALTEALNSSGN
NT seq
4200 nt
NT seq
+upstream
nt +downstream
nt
ttgaaagacctactgaatttgctgaaaaaccagggtcaagtcgaagagttcgacgcaatc
cgtatcggacttgcatcgcctgagatgatccgctcttggtcgtttggtgaagttaaaaag
ccggaaaccatcaactaccgtacgttcaagcctgagcgtgacggtctgttctgcgccaag
atctttggcccggtaaaagattacgagtgcctgtgcggtaagtacaagcgcctgaagcac
cgtggtgtcatctgcgaaaaatgcggtgttgaagtagcactggccaaggttcgtcgcgag
cgcatggctcacatcgagctggcttcgccggttgctcacatctggttcctgaaatcgctg
ccgtcccgtatcggtttgctgatggacatgaccctgcgtgatatcgaacgtgttctctac
ttcgagagctatgtcgttatcgatccaggcatgactacccttgaaaaaggtcagctgctg
aacgacgagcaatacttcgaagccctcgaagagttcggtgatgacttcgacgcccgcatg
ggtgccgaggctgtccgcgaactgctgcacgctatcgatctggagcacgaaattggccgt
ctgcgtgaagaaattccgcaaaccaattccgaaaccaaaatcaagaagctgtccaagcgt
ctgaaattgatggaagccttccagggttccggcaacctccctgagtggatggtgctgacc
gttctgccggttctgccgccagatctgcgtcctctggttccgcttgacggtggccgtttc
gcgacgtccgacctcaacgatctgtatcgtcgagtgatcaaccgtaacaaccgtctgaag
cgtctgctggatctgtctgctcccgacatcatcgtgcgcaacgaaaagcgcatgctgcag
gaagcggtcgatgcgctgctcgacaacggtcgtcgcggtcgtgcgatcacgggttcgaac
aagcgtcctctgaagtccctggctgacatgatcaagggtaagcagggtcgtttccgtcag
aacttgcttggtaagcgcgttgactactcgggccgttcggtaattaccgtaggtccgacc
ctgcgtctgcaccagtgcggtctgccgaaaaaaatggctctcgagctgttcaagccgttc
atcttcggcaagctggaaatgcgtggcctggccacgactatcaaagctgccaagaagatg
gtcgagcgcgagctgccagaggtctgggacgttcttgctgaagtaattcgcgaacacccg
gtgcttctgaaccgcgcgccaacgcttcaccgtctgggcatccaggcgtttgaaccagta
ctgatcgaaggtaaggctattcagctgcatccgctggtctgtgctgcgtacaacgccgac
ttcgacggcgaccagatggccgttcacgtacctttgacgctggaagcccagctcgaagcg
cgtgcactgatgatgtcgaccaacaacattctgtcgccagccaacggtgagccaatcatc
gttccttcgcaggacgttgtactgggtctgtattacatgactcgtgaagcgatcaacgcc
aagggcgaaggtcgtgtgtttgcggacctgcaggaagtcgaccgcgtattccgcgccggc
gaagcggctctgcatgccaaggtcaaggttcgtatccacgaaacggtcaacgaccgtgac
ggtggcagcgtcaagaacacccgtatcgtcgacaccactgtcggccgtgcgctgctgttc
caggtggttccggccggcctgtcctacgacgtcgtcaaccagcctatgaagaagaaggcg
atctccaagctgatcaaccagtgctaccgcgtggttggtttgaaagagaccgtgatcttc
gctgaccagttgatgtacaccggttttgcatactcgaccatttcgggtgtttccatcggc
gttaacgacttcgttatcccggatgaaaaagctcgcatcatcgacgcggccaccgaagaa
gttaaagagatcgaaagtcagtacgcctccggcctggtaacccagggcgagaagtacaac
aaggtgatcgacctctggtccaaggccaacgacgaagtgtccaaggcaatgatgtcgaac
ctctcgaaagagaaggtcatcgatcgtcatggcgtcgaagttgaccaggaatccttcaac
tcgatgtacatgatggctgactccggtgcgcgtggttctgctgcccagattcgtcagttg
gctggtatgcgtggtctgatggccaagcctgacggttccatcatcgaaacgccgatcact
gcgaacttccgtgaaggtttgagcgtacttcagtacttcatctccactcacggtgctcgt
aagggtcttgcggataccgcactgaaaaccgctaactccggttatctgactcgccgtctg
gtagacgttgctcaggatctggtcgttaccgaggtggattgcggtaccgagcacggtctg
ctgatgactccgcacattgaaggcggtgacgttgtagagccgctgggtgagcgcgtactg
ggtcgggttatcgcccgtgacgtgttcaagccgggcacagaagacgtcatcgttcctgct
ggcacactggtagacgagaagtgggtcgagttcatcgagctgaacagcatcgacgaagtg
atcgttcgctcgccaatcagctgtgaaacgcgctacggcatctgtgccaagtgctacggt
cgcgacctggctcgcggtcaccaggttaacatcggtgaagctgtcggcgtaatcgctgca
cagtcgatcggtgagccgggtacccagctgacaatgcgtacgttccacattggtggtgcg
gcaagccggacctcggcagccgacagcgttcaggtgaagaatggcggtactgtccgtctt
cacaacctgaagcacgttgagcgtgttgacggtcacttggttgcggtatcccgctccggt
gaactggccatcgctgatgacttcggtcgcgagcgtgagcgttacaagctgccatacggt
gcagtgatttcggtgaaggaaggcgacaaggtcgacgctggttcgatcgtggccaagtgg
gatccgcacactcacccaatcgtcaccgagatgaaaggtactgttacctacgtcggcatg
gaagaaggcatcacgatcaagcgtcagacagacgaattgaccggtatgaccaacattgaa
gtgcttgacgccaaagaccgtccggctgccggcaaggacatccgtcctgctgtgaagatg
gtcggtctggatggcaaggatctgctgttgccgggtactgacgtacctgctcagtacttc
ctgccggccaacgccctggtcggtgtggctgacggtgcgcagatcgcgatcggtgatgtt
atcgctcgtattccgcaggaaacttcgaagactcgtgacatcaccggtggtctgccgcgt
gttgccgacctgttcgaagcccgtcgtccgaaagaggcgtcgatccttgcagaagtcagc
ggtaccatcgcattcggtaaagagaccaagggcaagcgccgtctggtcattaccccgaac
gacggtagcgatccgtacgaagagctgattccgaagtggcgtcacctgaacgtcttcgaa
ggcgaacaagtgaaccgcggcgaagttatctccgacggtcctagcgatccacacgacatc
ctgcgtctgctgggtgtgagtgcgctggccaagtacatcgtcaacgagattcaggatgta
taccgtctgcaaggcgtgaagatcaacgacaagcacatcgagacgattctgcgtcagatg
ttgcgcaaggttgaaattgccgagtctggcgattccagtttcatcaagggcgaccagatg
gaattgactcacgtactggtagaaaacgagcgtctgagcacggaagacaagtttgtctcc
aagttcactcgcgtgttgctgggtatcaccaaggcatcgctgtccaccgagtcgttcatc
tccgcggcctccttccaggagacaacccgcgtgctgaccgaggcggctgtgactggcaag
cgcgattatctgcgcggcctgaaggaaaacgtggttgtgggtcgtctgatcccggccggt
accggtctggcttatcacagcgagcgcaagcgtcgtcgtgaaatggacaagccgacccgt
gtcagcgcgagcgaagtagaagccgctctgactgaagcgttgaactccagcggtaattga
DBGET
integrated database retrieval system
