Polyodon spathula (Mississippi paddlefish): 121294119
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Entry
121294119 CDS
T07273
Symbol
ptch2
Name
(RefSeq) protein patched homolog 1
KO
K11101
patched 2
Organism
pspa
Polyodon spathula (Mississippi paddlefish)
Pathway
pspa04340
Hedgehog signaling pathway
Brite
KEGG Orthology (KO) [BR:
pspa00001
]
09130 Environmental Information Processing
09132 Signal transduction
04340 Hedgehog signaling pathway
121294119 (ptch2)
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Ortholog
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GFIT
Motif
Pfam:
Sterol-sensing
TRA2_N
Patched
MMPL
Motif
Other DBs
NCBI-GeneID:
121294119
NCBI-ProteinID:
XP_041073633
LinkDB
All DBs
Position
18:28304716..28335312
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AA seq
1441 aa
AA seq
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MASDPSIPGVSICGELPPSYTRSPPPVNSDLLRRPSYCHAAFALKQISKGKAVGQKAPLW
IRARFQALLFSLGCQIQRHCGKVLFIGLLVFGALAVGLRVAAIETDIEQLWVEAGSRVSR
ELRYTKEKQGEETVFTSQMLIQTSKRGGTNILTQEALLQHLEAAQAASKVQVSLYGKLWD
LNKICYKSGVPVIENGMIERMIDKLFPCMIVTPLDCFWEGAKLQGGSAYLPGKPDIQWVN
LDPVQLMEELGQFTSLEGFREMLDKAQVGHAYMNRPCLDPTDPDCPDSAPNKVLRECPDI
AQELRGGCHGFSKKFMHWQEELILGGRAKDSQNALLSAEALQTMYLLMSPKQLYEHFKDD
YDIHDINWNEEKATAILESWQRKFVEVAHQSILQNSSQSIHAFSTTTLNDIMKSFSDVSV
IRVAGGYLLMLAYACVTMLRWDCAKSQGAVGLAGVLLVALSVASGLGLCSLLGISFNAAT
TQVLPFLALGIGVDDMFLLAHAFTETGYNIPFKERTGECLRRTGTSVALTSINNMIAFFM
AALVPIPALRAFSLQAAIVVVFNFAMVLLIFPAILSLDLHRREDKRLDILCCFYSPCSNR
VIQIQPQEFADANDNHTYPVTTYSGPTITTSTQITTTVQAFTQCDASGQHIVTILPPTSQ
ISTSPPSVLVPPNQDPYGSQLFTPSSSTRNLLAQVDESKEGRECVPLPFFRWNLSDFARD
KYAPLLLKPESKVIVVILFMSLLGLSLYGTTMVHDGLYLTDIVPRDTKEYDFISAQFQYF
SFYNMYLVTMGGFDYPRYQRQLLQLHNSFKSVKYVVRDSNQQLPRMWLHYFQDWLQGLQA
AFDADWAAGRITRDNYRNGTEDGVLAYKLLVQTGTKKEPFNYSQLTTRRLVDEEGLINPD
TFYIYLTVWVSNDPLGYAASQANFDPHPPEWIHDKYDTTGENLRIPMAEPLEFAQFPFYL
NGLRETSDFIEAIESVRSICDDFSKKGILNYPNGYPFLFWEQYIGLRHWFLLAISVVLAC
TFLVCAILLLNPWTAGIIVFILAMMTVELFGIMGLIGIKLSAIPVVILIASVGIGVEFTV
HVALGFLTAIGNRNLRSTVALEHMFAPVVDGAISTLLGVLMLAGSEFDFILRYFFAVLTI
LTVLGLLNGLVLLPVLLSVIGPPPEVRPADNGSCLPTPFPEPIPPPMNHHGLYTGRYPPG
RRHHAFSESSDSEYYSETTTTSGLGDEEYQYCDRSAYIIPPANTPPSHILLEASKNPSFP
KLTIVKPYKEGQDVPAKKEILNTPEQPTVNSVSSQIARQDNKQDFQQDQGPRRQHLPSDR
PQGPGRTNYSGPRPQYSSKPNYPRTTLPAYGAVTRVPGSNRAVTTVTATASVTVAVHPSV
PGSFRGYTHEGFEDCESDCFEETLPPSYRASEKRTNSSKTETSELQDLECERMSRGASTR
H
NT seq
4326 nt
NT seq
+upstream
nt +downstream
nt
atggcctcggatcccagtatcccaggggtcagtatctgtggagaattacccccgagttat
acgcgttctcccccgcctgtaaactcagatctgctccggagacccagttattgccacgct
gctttcgcactaaaacagatttcaaagggtaaggctgtgggacaaaaagccccgctgtgg
atccgggcgcggttccaggccctgctcttctcactgggctgtcagatccagcggcattgt
ggaaaggtcctcttcattggacttcttgtattcggcgctttggcggtcggattgcgggtt
gcagcaattgagacggatattgagcagctttgggtggaagctggcagccgcgtgagtcga
gagttgaggtacaccaaggagaaacaaggagaggagactgtctttacatcacaaatgctg
attcagacctctaaacgcggaggtaccaacatccttacccaggaagctttgctgcagcac
cttgaggccgcacaagcagccagcaaagtccaggtgtctttgtatggaaagttgtgggat
cttaataaaatctgctacaaatcgggtgtccctgtcatcgagaatggaatgattgagagg
atgatcgacaagctgtttccctgcatgattgtgactcctctggactgtttctgggaggga
gctaaactccagggcggctctgcctaccttccagggaagccagatatccagtgggtgaac
cttgacccggtgcagctgatggaggagctgggtcagttcacatcgctcgagggcttccgt
gagatgctggacaaggcgcaggtggggcatgcctacatgaaccggccatgtctggaccca
actgaccctgactgccccgacagtgcaccaaacaaagtgctgcgtgagtgtcctgacatt
gcgcaggaactccgcggtggctgtcacggcttctctaagaagttcatgcactggcaggag
gagctgatactgggcggcagggccaaagactcccagaacgcactgctcagtgctgaagcc
ctccaaaccatgtatctcctgatgagccccaagcagctttatgaacacttcaaggatgac
tacgacatccacgacattaactggaatgaggagaaggccactgccattctagagtcctgg
cagaggaagtttgttgaggtggctcaccagagcatcctccaaaactcctctcagagtata
catgccttctctaccaccaccctcaacgacatcatgaaatccttctccgatgttagtgta
atccgcgtggcgggcggttacctacttatgttggcatatgcctgtgtgaccatgctgcgt
tgggactgtgccaagtcccagggggcagtggggcttgctggcgtcctgttggtagcgctg
tctgtagcgtctggtttagggctatgctctctcctagggatttccttcaatgcggccaca
acgcaggtgcttcccttcctggctctggggatcggtgtggacgacatgtttctgttagcc
catgctttcactgagactggctacaacatcccctttaaggagagaactggggagtgcctc
aggcgcactggaacaagcgtggctctaacctccatcaataacatgattgccttcttcatg
gctgctcttgttcccattccagccctgagagctttctccttgcaggctgccatagttgtg
gtctttaactttgctatggtcctgctcatcttcccggccatcttgagtctggacctccac
cgacgagaggacaagaggcttgacattctctgctgcttctacagcccatgttctaaccgg
gtaatccagatccagccgcaggagtttgccgatgccaacgataaccacacctacccagtc
actacttacagtggccccaccatcacgaccagcacccagatcaccaccacggtgcaggcc
ttcacacagtgcgacgcctcgggccagcatatcgtcaccatcctgcctcccacctcccag
atctccacaagccccccctctgtgttggtgcctcccaaccaagatccctatggctcacag
ctcttcacaccctccagctccacccgcaacctcctggcccaggtggatgagtccaaagag
gggcgggagtgcgtgcctctgcccttcttccggtggaacctgtctgactttgcccgcgac
aagtatgctccactgctgctcaaaccagaaagcaaggtgattgttgttatcctgttcatg
agcctcctgggtctgagcctatacggcactacaatggtccatgatggcctctacctgact
gacattgtccctcgtgacaccaaggagtatgattttatctcggctcagttccagtacttc
tccttctacaacatgtacttggtgactatgggtggctttgactacccccgctaccaacgg
cagctcctacagctacacaacagcttcaagtctgtcaaatacgtggttcgtgacagcaac
cagcagcttccccggatgtggttgcattacttccaggactggctccaaggtctgcaggca
gcattcgatgctgactgggcagcaggcaggatcacccgtgataactaccgcaatggcaca
gaggacggtgtactggcatataagctgctcgtccagactggcactaagaaggagccattc
aactatagccagttgaccaccaggcgactggtagatgaggaaggcttgatcaaccctgat
acattttacatctacctgacggtgtgggtcagtaatgaccctcttggttacgcagcctcc
caggccaactttgacccccaccctcctgagtggatccatgacaaatatgatacaacgggg
gagaacctacgcattcccatggctgagccactggagtttgcccagttccccttctacctg
aacggtctacgtgagacctcagacttcattgaggccattgagagcgtgcgctccatctgc
gatgatttctcaaagaagggcatcctcaactaccctaacggctaccccttcctgttctgg
gagcagtacattggcctgcgccactggttcctgctcgccatcagcgtggtgctggcctgc
accttcctggtgtgcgccatcctcctgctgaacccttggacagccggcataatcgtgttc
attctggctatgatgacggttgagctcttcggaatcatgggattgatcggtattaagctg
agcgccatccctgttgtaatcctgatcgcttctgtggggatcggcgtggagttcaccgtc
cacgtagcactgggttttttgacggctatcggcaacaggaacctccgctccacagtggca
ctggaacacatgtttgcccctgtggtagatggcgccatctccactcttctgggcgtgctg
atgctggctggttccgagtttgacttcatcttgaggtatttctttgcagttctgaccatc
ttaactgtgttgggcctcctaaacggactagttctgctccctgtactgctatcggtcatt
ggcccacctcctgaggtcagaccagcagacaatggtagctgtttacccacgcctttccca
gagccaatcccccctcccatgaaccaccatggtctctacacaggacgctaccctccaggc
cgacgccaccacgccttctctgagtcttcagactccgaatactactctgagacaaccacc
acgtcgggccttggagatgaggagtaccagtactgtgaccgaagcgcatatatcatccct
cccgccaacacccctccctcacacatccttctggaggccagcaagaaccccagcttcccc
aaactcacgattgtaaagccgtacaaagagggtcaggacgtccctgccaaaaaggaaatc
ttaaacacaccagaacagcccactgtgaactctgtcagctctcagatagcaaggcaggac
aacaagcaggactttcagcaggaccaagggccaaggaggcaacatttgcctagtgacaga
ccccaagggccagggaggactaattactctggccccaggcctcagtacagcagcaaaccc
aactaccctaggactacgctgcctgcgtatggcgcagtaaccagggtaccggggtctaat
cgcgctgttaccacggtgactgccaccgcctcggtgacggtcgctgtgcaccccagtgtg
ccggggtcattcaggggttacacacatgagggctttgaggactgtgaatcagactgcttc
gaggaaacacttccaccttcttacagagcctctgagaaaaggactaactcctccaaaacg
gagacctcggagctgcaggaccttgaatgtgaaagaatgagcagaggcgcctcaactagg
cattag
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