Polyodon spathula (Mississippi paddlefish): 121294180
Help
Entry
121294180 CDS
T07273
Name
(RefSeq) retinoic acid receptor RXR-gamma-A-like isoform X1
KO
K08526
retinoid X receptor gamma
Organism
pspa
Polyodon spathula (Mississippi paddlefish)
Pathway
pspa03320
PPAR signaling pathway
pspa04920
Adipocytokine signaling pathway
Brite
KEGG Orthology (KO) [BR:
pspa00001
]
09150 Organismal Systems
09152 Endocrine system
04920 Adipocytokine signaling pathway
121294180
03320 PPAR signaling pathway
121294180
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
pspa03000
]
121294180
09183 Protein families: signaling and cellular processes
03310 Nuclear receptors [BR:
pspa03310
]
121294180
Transcription factors [BR:
pspa03000
]
Eukaryotic type
Zinc finger
Cys4 hepatocyte nuclear factor 4-like
121294180
Nuclear receptors [BR:
pspa03310
]
2. Hepatocyte nuclear factor 4 like
2B. Retinoid X receptor (RXR)
121294180
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Nuc_recep-AF1
Hormone_recep
zf-C4
tRNA_bind_3
Motif
Other DBs
NCBI-GeneID:
121294180
NCBI-ProteinID:
XP_041073734
LinkDB
All DBs
Position
18:complement(25590688..25611789)
Genome browser
AA seq
483 aa
AA seq
DB search
MAGKETAEEPATRLNMYENLRPFMMLPMGCENSSVQVNHTPVNAPASQSAVNSMAGHPSV
ISASINHSRSFTSPMNTLGPPINGLASPYSVITSSLGLPSVSLPSTPGMNYGGLNSPQMS
LMSNVSSTEDIKPPPGLSGIGNLSSYPCTSPGSLSKHICAICGDRSSGKHYGVYSCEGCK
GFFKRTIRKDLTYTCRDSKDCIVDKRQRNRCQYCRYQKCLAMGMKREAVQEERQRGREKS
DNEVESTGTYNDEMPVDKILDAELAVEPKTEIYVDASTDNSFNDPVTNICQAADKQLFTL
VEWAKRIPHFSELPLDDQVILLRAGWNELLIASFSHRSVSVKDGILLATGLHVHRSSAHS
AGVGSIFDRVLTELVSKMKDMQMDKTELGCLRAIVLYNPDAKGLSNPLEVEGLREKVYAS
LEGYTKQKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPIDTFLMEMLEAPH
QIT
NT seq
1452 nt
NT seq
+upstream
nt +downstream
nt
atggctggaaaagaaactgcagaagaacctgcaacaagactaaacatgtatgagaatctc
cgtcccttcatgatgcttccgatgggttgtgaaaattcttctgtgcaggttaaccacaca
cctgtgaacgctcctgcatcacagtctgcagtgaattccatggctgggcacccatcagtg
atcagtgcatcaatcaaccattcaaggtcattcacatccccaatgaacacactaggacca
cctatcaatggattagcctctccatattcagttataacatcgtccttagggttgccgtct
gtctcgctaccatccacacctggcatgaactatgggggattaaatagtccgcagatgagc
ttaatgagcaatgtgagcagtacagaagatatcaagccccctccaggactttctggaatt
ggaaaccttagcagctatccgtgtacaagcccgggatccttatcaaaacacatatgtgcg
atctgtggagatcggtcctcagggaagcactacggcgtgtacagctgtgaaggatgcaaa
gggttcttcaagaggactatcaggaaagaccttacatacacgtgtcgggacagcaaggat
tgtatagttgacaagcgtcagcgcaatcgctgccagtactgccgctatcagaagtgtctg
gcaatgggaatgaagagagaagctgtacaggaggaaaggcaaagaggcagagaaaagagt
gataatgaggtggagtcaacaggcacttacaatgatgaaatgcctgtggataaaatcctg
gatgcagaacttgcagttgaaccaaagacagaaatctatgtggatgccagtacagacaat
tcttttaatgatccagttaccaacatttgccaagcagcagacaaacagctcttcactctg
gtggaatgggctaagagaatcccccacttttcagagctgcctctggatgatcaagtcatt
cttctgagggcaggttggaatgaattgctaatcgcctcattttcacaccggtcagtatct
gtgaaagatggcatccttcttgccactggtttacatgtacatcgaagcagtgcccacagt
gctggggttgggtccatttttgacagagttctcacagaattagtgtctaaaatgaaagac
atgcagatggataaaacggaactgggatgccttcgagccattgttctttacaatccagat
gcaaagggcctatcaaacccactggaagtagaaggactgagggaaaaggtttatgcatca
cttgagggttatacgaaacagaaatacccagagcagcctggcaggtttgccaaacttctg
cttcgactgcctgcactacgatcaattgggttgaaatgtttagagcacctcttcttcttc
aagttgattggagacaccccgatagacacttttcttatggaaatgcttgaagcaccacac
caaataacatga
DBGET
integrated database retrieval system
