Polyodon spathula (Mississippi paddlefish): 121294236
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Entry
121294236 CDS
T07273
Name
(RefSeq) uncharacterized protein LOC121294236 isoform X1
KO
K12484
Rab11 family-interacting protein 1/2/5
Organism
pspa
Polyodon spathula (Mississippi paddlefish)
Pathway
pspa04144
Endocytosis
Brite
KEGG Orthology (KO) [BR:
pspa00001
]
09140 Cellular Processes
09141 Transport and catabolism
04144 Endocytosis
121294236
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
pspa04131
]
121294236
Membrane trafficking [BR:
pspa04131
]
Protein recycling
Rab GTPases and associated proteins
Rab11 associated proteins
121294236
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
C2
RBD-FIP
MAT1-1-2
Motif
Other DBs
NCBI-GeneID:
121294236
NCBI-ProteinID:
XP_041073751
LinkDB
All DBs
Position
2:22786950..22843654
Genome browser
AA seq
1863 aa
AA seq
DB search
MSLEVDDDNRWAPTHIQVTVLRAKGLRAKGKHGTSDVYTIIQVGKDKFSTSVVEKTTSPE
WKEECSFELLPGVLEADLRSAYPPGSSDLVLTVMHRSIGLDIFLGQAVIPLDKIFQEKSS
RNNEWYKLHSKSGKKEKERGEIQVTMQFTHNNLTASMFDLSMKDKHRSTFGKFKDKMKGK
KRGEVESSSAVVPSEIGVLSETGGRSTSHRGEEQDDEEHEEGKRSGMRGFFKKPKLRKLS
DSRSNTSLASGSSVSSSQGGSLSPTAGISVVVSDLSNSPSISSSLADSPVHTSQPSPKLL
THKRTFSDEVSQVIAMPQPREVEKLKAKDIPLSQSSLCINGSHVYAVDTPAPSTLPKVTL
GVLQKSSTLSLSLQNLTKKNEETPKADLITRRWSLDKTGKLVAPLGDQEDSTKATPGHKK
GKPVQIATPIISMANMEPDSEKHAEEVKKEEHEKHKLHLFGGKKESKGNEMVKSGDKMSP
AGQYPEEKHKGWFGTKEAQSKPSLDVSPKVETSSDAPSHISPSFPVLSSPASAVGPVSLG
STPHANPFTPALVTSPCQSSTNPFFTNIQSNPFFEELLADQVLKSPPPTHCLSSFALEPS
HATSSWVEGPRSPVDESFPKPGPAEEKPSGNAVIPGPVLMPVPRDSIQIPRPVRTPCPLP
VPSKSETTGNWEDSFDAFAASRLKPEQKGKSKPRSTGGSLHLAETGVLSPLATGGPQEDS
SKSQELVETSKADGVVEQPFAQASNSSAPPIPLRRSVKANVKDDNRGRWLDRAQVIAVEK
EASLLSQTDAAAMQLRKEVDRDKSLLTPSQNSVLKAPEKDSVSLTESNVSLNEELKNKEG
SSANDVFKSNDALVDTVEAVHKECTVAEMSQSTKSSLPDENSPRYVDMCSVTFMSKARQG
MNEDVDKFVKQSLSQMQNTAIETPRSDPGNCKDLTASTHEVGITEVSGSEADSGTRSLSE
PESSVSVSESDIDINEKNFNGSNQKGFDSTGSKTDSGTKSPASSNQEQLAGISGSDTYSR
ASKSDGLIPEFRSNSSESNASNPVGSFPEILTNTHHANKPFGLFSHIFTNAPETNDNKPI
SSLSGVCSNPPETNDGKQMHLSQEVFTNAQQTNANSNISLPEICTNASGIQIDSSNGGQS
AKKEKSVAERDQENNARSSLVLTQEVKVASLVADRHETSKKVLAVIEEVTSDFLGGRPAV
SVRNRTLSEKPNLPPYVPSAAVEKCSAEASGLLTHGSITNSGNLLLDKHANSEKPVEVTS
ASKEGKSLYESKKLDVDPGDGANSGEQQTGNANNLPLVAVAPPPEPPRVAVELFPNVSEP
SPSSQEVKCNVVKKNVSRLEKENYSGTVEVEDLIKKQEEKCSFVVLLDSCSRADEVLSSE
ILGADRFRLKPGVITNSNLESPGYGMVNSNEGKELEQYKTCKSTFSLEGLDLTPDTDGNM
RPMYPGESKQPCRSEMDSTNTETKSDFAGQTNVNPGKISHINLDSCQKKDETEQSDQFQS
ITQNAKTVTDITSENPVKPKPGIEAPLIHFSGLGTMPNKPLIKAQEVTLPSPSSASGWLT
SSASQDMVVDLKVEEFWRPQHKGQPKRHSIGSPFENPFKQLMSLSGNPFVQTPASQCQSS
EHYSSSISSAQKGNFKDLHMRVAPQCVRSTSLPGDQFFRPFLHESSPQAASTPSLVAATN
SRLTHLPSPILSSSTVRPPTVIAQVAAAAAPSSSCPAPLTVLPEETQPAESTPLGHGSSP
HPVKPLSSSDSHDEKRQGGSSIPVSVLEKLQSSVQPVHSTLQGQHDAEGIKALTSPDHAA
RYYHLTHDELIALLLEREAELDKRGAELQKWTGKVRDLEEYIDRLLVHVIEQTPILLQVP
QGK
NT seq
5592 nt
NT seq
+upstream
nt +downstream
nt
atgtcgctagaagtagacgatgataatagatgggcgccgacccatatccaggtgacagtt
ttacgggctaagggcttgagggcgaaaggcaaacatgggaccagcgatgtgtacaccatc
atccaggtggggaaggataaattctccacctctgtggttgaaaagactacttctcccgaa
tggaaagaggaatgctcgtttgagctgctcccgggggtgctggaggcagacctcaggtcc
gcttatcccccagggagcagtgatctggtcctaaccgtgatgcataggtcgatcgggctg
gatatctttttggggcaagctgttattccgctggataaaatatttcaggagaagagctcg
cggaataacgagtggtacaagctgcactccaagtctgggaagaaagagaaggaacgaggc
gagatccaggtgaccatgcaattcactcacaacaacctgacagcgagcatgttcgatctg
tccatgaaggacaagcaccgctccacgtttggcaaattcaaggacaagatgaaggggaag
aagagaggagaggtggagtcttcctcggccgtcgtgcccagtgagataggggttctgagc
gagacggggggccgcagtaccagccacaggggtgaggaacaggatgatgaagagcacgag
gagggcaagaggagcggaatgaggggcttcttcaagaagcccaagctgcgcaagttgtcg
gacagccgctccaacacgtccctggcctcagggagcagtgtgtcgtcctcacaggggggc
agtctaagccccactgcagggatcagtgtggtcgtgtctgacctctccaactcccccagc
atcagcagcagcctggcagacagccccgttcacaccagccagccttctccaaagctactg
acccacaagaggacgttcagcgacgaggtgagccaggtcatcgccatgccccagcccaga
gaggtggagaaactgaaggccaaggacatcccgctctctcagtcttccctgtgcatcaac
ggcagccacgtctacgcagtggacactcctgccccctccacattgccaaaggtcactctg
ggagtgcttcagaaatcctccactctctcactctcccttcagaacctcaccaagaagaac
gaggagacccccaaagctgacttgatcacccggcggtggtccctggacaagacaggcaag
ctggtagcaccacttggagatcaggaggattccaccaaagccacacctggtcataaaaaa
ggcaaaccagtacagatcgccaccccgatcatctctatggccaacatggaaccggacagt
gagaagcatgcagaagaggtgaagaaagaggaacacgagaagcacaaactgcacttgttc
ggggggaagaaagagtcgaaggggaacgagatggtcaagagtggagacaaaatgagcccc
gctggccagtaccctgaggagaagcacaagggctggtttggcaccaaggaggcccaaagc
aaacccagcctggacgtgtctcctaaggtagaaaccagctcagatgctccctctcacatc
tcaccttccttccctgttttgtcctctcctgcttccgctgttggtcctgtttcactgggc
agcacgcctcacgctaaccccttcactcctgcactcgtcacctcaccctgccagtcctct
accaaccccttcttcaccaatatccagagtaaccctttctttgaggagctgttagctgac
caggtgctaaaatctcccccacccactcactgtctctccagtttcgcccttgagccttcc
catgctacttcctcttgggttgaaggtccccgttcccctgtcgatgagtcattcccaaaa
cctggccctgcagaggagaagcccagcggtaacgctgttatccctggaccagttctaatg
ccagttccgagggacagcattcagataccaagacctgtcaggacaccctgtcctttgccg
gtcccttccaaaagtgagaccacagggaactgggaagattcatttgatgccttcgctgcc
agcaggctcaaaccagagcagaaaggtaagagtaaacccagatcaacagggggatcgctc
cacttggctgagacaggggttctttcacctctggcgacaggaggtcctcaagaagattct
tccaagtctcaggaacttgttgaaacatcgaaagcagatggtgtagtggaacagcctttt
gcacaagctagcaactccagtgccccacccattcctctgcgcaggtcagtaaaggccaat
gtcaaggacgataacagaggaagatggttagatagggcacaggtgattgcagttgagaaa
gaagcgagtttgctttcccaaacagacgctgcagccatgcaacttcggaaagaggttgat
agagacaagagtctactgactccatcacagaactctgtgttaaaagcaccagaaaaggac
agtgtttctttaacagaatcgaatgttagtttaaatgaagaattgaaaaacaaggaaggg
tctagcgctaatgatgtatttaaaagcaatgatgctctggtggataccgtagaagctgta
cataaagagtgtacagtggcagaaatgagtcaatccactaagtcttctctgccagatgaa
aatagcccaagatatgtggatatgtgttcagtaacattcatgtccaaagctaggcaggga
atgaatgaagatgtagacaagtttgtgaagcagtcgctttcacagatgcagaacacagcc
attgaaacacctagaagtgatccaggcaattgtaaagacctcactgcctcgacccatgaa
gtaggaatcactgaggtatcgggaagtgaagcagatagtggcacaaggagcttatcagaa
ccagaaagtagtgttagtgtgtcagagagcgacatagatattaatgaaaagaattttaat
ggctcgaaccaaaaaggatttgatagcacaggaagcaagacagatagtggaacaaagagt
cctgcttcttctaaccaggaacaacttgctgggatatcaggaagtgacacatatagtagg
gctagcaagtcagatgggttgattccagaatttcgtagtaatagttcagaatctaacgct
agtaacccagttggctcattcccagagattttaactaatacacatcatgctaacaaaccg
tttggattattttctcatatttttactaatgcaccagaaactaatgataacaagccaata
agctcgctctctggtgtttgttcaaatccaccagaaactaacgatggcaagcaaatgcac
ttgtcccaggaagtgtttactaatgcacagcagactaatgctaattcaaatatctccctt
cctgaaatatgtactaatgcatcaggaattcagatagatagcagtaatggaggacagtcg
gccaaaaaggagaaatctgttgctgaaagagatcaagagaataatgctagaagttcactt
gtcttgactcaagaagtcaaagttgcaagtctggtggctgacagacatgagacttccaag
aaagtgcttgctgtgatagaggaagtcacttcagactttcttggtggcagaccagcagtg
agcgttcgtaacaggacactttctgagaaaccgaatcttcctccttatgtgccttcagcg
gctgtggagaagtgttcagctgaagcctctggactgttgactcatgggtccatcacaaac
agtggcaatctgctcttagacaaacatgctaatagtgaaaaacctgtagaagttacatca
gcttcgaaagagggaaagtccttatatgagtccaaaaaattagatgttgacccaggtgat
ggcgctaatagtggtgagcagcaaactggaaatgcaaataacttgccgctggttgcagtt
gcaccaccaccagaacctccaagagttgctgttgagctttttccaaatgtttcagaacca
agtccaagctcacaggaagtcaagtgcaatgtggtaaagaagaatgtctccaggctggaa
aaagaaaactattctgggacggtggaggtagaagatttgattaaaaagcaagaagagaaa
tgttcatttgtggttcttttagactcttgcagcagagctgatgaagttctgtccagtgaa
atactgggtgcagataggtttcggttgaaaccaggagttattacaaattcaaacctggag
tctcctgggtatggaatggtaaactcaaacgagggaaaagaattagagcaatacaagact
tgcaagtcaacattttctttggaaggattagacctaactccagacacagatggcaacatg
agaccaatgtacccaggtgaatccaaacaaccttgtagatcagagatggacagcaccaat
acagagacaaaatcagactttgcgggacagaccaatgtgaatccaggaaagatctcccat
atcaatcttgattcctgtcagaagaaggatgagactgagcaatcagatcaatttcaaagc
attacacaaaatgcaaaaactgttacagacataacatcagaaaacccagtgaagccaaag
cctggcattgaagcacctctcatccactttagtggacttggaaccatgcctaacaagcca
ctaatcaaagcacaggaagtaacacttcccagcccgtcttctgcctctggttggctcacg
tccagtgcatctcaagatatggtagtagacttaaaggttgaggagttttggaggcctcag
cataaaggtcagccgaaacgacacagtattggctctccctttgaaaatccctttaaacag
ttaatgtccctcagtggcaacccctttgtgcagacacccgcttcccaatgccaatcctct
gagcattactcctcttcgatatcctccgctcagaaagggaacttcaaagaccttcacatg
agggtggcaccgcagtgcgtgcgctcaaccagcctcccaggggatcagttcttcaggcca
ttcctgcatgaaagcagtccccaggctgcttccaccccctcccttgtggctgcgactaac
tccaggttaacccacctcccctcccccatcctgtcctcttcaactgtgaggccaccaaca
gtgatcgcccaggtagcagcagccgctgccccctcctcctcctgccctgcaccactcacg
gttttgcccgaggagacacagccagctgagagcaccccgttgggtcacggaagcagccct
cacccggtgaagcctctcagctcctcggactcccatgatgagaagagacagggcggcagc
tctattccagtcagcgtgcttgagaagctgcaatccagtgtgcagccggtgcacagcacc
ctgcagggacagcatgacgcagaggggatcaaggccctgacatccccagaccatgccgcc
cgctactatcacctcacccacgatgagcttattgcactgctgctggagcgggaggcggag
ctagacaagcgaggggcggagctgcagaagtggacgggtaaggtgcgcgacctggaggag
tacatcgacaggctgctggtgcatgtcatagaacagacgcctatcctgctgcaggtgcct
cagggcaaatag
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