Polyodon spathula (Mississippi paddlefish): 121294310
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Entry
121294310 CDS
T07273
Name
(RefSeq) DET1 homolog isoform X1
KO
K10571
de-etiolated-1
Organism
pspa
Polyodon spathula (Mississippi paddlefish)
Pathway
pspa04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
pspa00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
121294310
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
pspa04121
]
121294310
Ubiquitin system [BR:
pspa04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
Cul4 complex
Target recognizing subunit (DCAF)
121294310
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Gene cluster
GFIT
Motif
Pfam:
Det1
Motif
Other DBs
NCBI-GeneID:
121294310
NCBI-ProteinID:
XP_041073839
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Position
19:complement(31877342..31883471)
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AA seq
558 aa
AA seq
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MEDECPTLKPRRIQNQNVVHRLERRRVCSGRAGAHWYRVRCFHQNLFSNFTVVNVEKPPC
FLRKFSPDGQCFIAFSADQTSLEIYEYQGCQAAEDLLWGQEGETLANGNDQRSLNIRGRL
FERFFSLMHVTNVASNGEHLNRECSLFTDDCRYVLVGSAAYLPEEPHPHFFEVYRNNESV
TPNPRSPLEDYSLHIIDLHTGRLCDTRAFKCDKIILSHNQGLYLYRNILAVLSVQQQTIH
VFQVTPEGTFLDVRTIGRFCYEDDLLTLSAVYPEAQAEGQPGFSRLYKEKTINSLKHRLM
VYLWRRAEQDGSATAKRRFFQYFDQLRQLRMWKMQLLDEHHLFIKYTSEDVVTLRVTDPS
QPSFFVVYNMVSTEVMAVFENTSDELLELFENFCDLFRNATLHSDAVQFPCSASSNNFAR
QVQRRFKDTIVNAKYGGHTEAVRRLLGQLPISAQSYSSSPYLDLSLFSYDDKWVSVMERP
KTCGDHPIRFYARDSGLLKFKIQAGLLGRPINHAFQWIDFICTTNQQEQWGALIQEQRGV
HIHVLLLYVHTAVYINRK
NT seq
1677 nt
NT seq
+upstream
nt +downstream
nt
atggaggatgagtgcccgaccctaaagccccgtcggatccagaaccagaatgtggtccac
cggctggagcggcggcgggtctgctcgggcagggccggggctcactggtacagagtgcgc
tgctttcaccagaacttgttctccaacttcacggtagtgaacgtggagaagcccccctgc
ttcctgcgcaagttctccccagacggccagtgcttcattgccttctccgcggaccagacc
tcgctggagatctatgagtaccagggctgccaggcggcagaggacctgctctggggccag
gagggggagaccttggctaacggcaacgaccagcggtcccttaacattcgcgggcgcctc
tttgaacgtttcttttctcttatgcacgtcaccaatgtggcctccaacggagagcacctg
aatcgcgagtgcagcctcttcacggatgactgccggtacgtccttgtgggctcggcagct
tacctccccgaggagccccacccacactttttcgaggtgtaccgtaacaacgagtcggtc
acccctaacccccgctcccccctggaggactactccctgcacatcatagacctccacacg
ggccgcctctgtgacacccgtgccttcaagtgcgacaagatcatcctgtcccacaaccag
gggctctacctctaccgtaatatcctggcagtgctctccgtgcagcagcagaccatccac
gtctttcaggtgactccagagggcaccttcttggacgttcggacgattggccgattctgc
tacgaggacgacctcctgaccctgtcggctgtgtaccccgaggcacaggctgaagggcag
ccgggattctcgcggctctacaaggagaagaccatcaactctctgaagcaccggctgatg
gtgtacctgtggcggcgggcggagcaggacggcagcgccaccgccaagcgccgcttcttc
cagtactttgaccagctgcggcagctgcgcatgtggaagatgcagctgctggacgaacat
cacctcttcatcaagtacaccagcgaggacgtggtcaccctgcgagttacggacccctcg
cagccctctttcttcgtggtatacaatatggtgtcgacggaggtgatggctgtgtttgag
aacacgtcggacgagctgctcgagctctttgagaacttttgtgacctgttccgcaacgcc
acgctgcacagcgacgcagtgcagttcccctgctccgcctccagcaacaactttgcacga
caggtccagcgcaggtttaaggatacgatcgtgaacgccaagtacggcggccacaccgag
gcagtgaggagactcctgggtcagctacccatcagcgcccagtcctacagcagcagcccc
tacctggacctctcgctcttcagctacgatgacaagtgggtatctgtgatggagcgcccc
aagacctgcggcgaccatcccatccgattttatgcccgggactcggggttgctgaagttt
aagatccaggcaggcctcttgggtcgccctatcaaccatgcgttccaatggattgatttc
atatgcacaacaaaccaacaggagcaatggggtgctctaatacaggagcaaaggggtgtt
catatacacgtgctactgctgtatgtgcacactgcagtatatattaacagaaaatga
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