Polyodon spathula (Mississippi paddlefish): 121294405
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Entry
121294405 CDS
T07273
Name
(RefSeq) low-density lipoprotein receptor-related protein 5-like
KO
K03068
low density lipoprotein receptor-related protein 5/6
Organism
pspa
Polyodon spathula (Mississippi paddlefish)
Pathway
pspa04150
mTOR signaling pathway
pspa04310
Wnt signaling pathway
Brite
KEGG Orthology (KO) [BR:
pspa00001
]
09130 Environmental Information Processing
09132 Signal transduction
04310 Wnt signaling pathway
121294405
04150 mTOR signaling pathway
121294405
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
pspa04131
]
121294405
Membrane trafficking [BR:
pspa04131
]
Endocytosis
Clathrin-mediated endocytosis
Low-density lipoprotein receptor (LDLR) family proteins
121294405
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ldl_recept_b
FXa_inhibition
Ldl_recept_a
DUF5050
Vgb_lyase
EGF_LRP2
SGL
cEGF
EGF
Insulin_TMD
Motif
Other DBs
NCBI-GeneID:
121294405
NCBI-ProteinID:
XP_041074008
LinkDB
All DBs
Position
19:complement(8279132..8345124)
Genome browser
AA seq
1602 aa
AA seq
DB search
METLFIGLLLYSYFLLVGASPLLLFANRRDVRLVDAGSGKPESAVVVSGLEDAAAVDFVY
SEGLIYWTDVSEEAIKQTLFNQSGNVQTVIVSGLDSPDGLACDWLGKKLYWTDSETNRIE
VANLNGTSRKVLFWQALDQPRAIALDPAHGYIYWTDWGEEPRIERAGMDGSTRKIIVDSD
IYWPNGLTIDLDEQKLYWADAKLSFIHRANLDGTFRQTVVEGTLTHPFALTLSGETLYWT
DWQTRSIHACDKKTGEKKREILNGIYSPMDIQVLGQERQPDIRTPCDENNGGCTHLCLLS
PREPFYSCACPTGVQLQEDGRTCKPGAEEVLLLARRTDLRRVSLDLPDFTDIVLQIDDIR
HAIAIDYDPVEGYVYWTDDEVKAIRRSLIDGTGAETLLTTEVNHPDGIAVDWVARNLYWT
DTGTDRIEVTRLNGTSRRILISENLDEPRAIVLDPVRGYMYWTDWGEKPKIERASLDGSD
RLVLLNDSLGWPNGLAIDYAAGKLYWGDAKTDKIEVINIDGTDRRTLLEDKLPHIFGFTL
LGDYIYWTDWQRRSIERVHKTKGIREIIIDQLPDLMGLKATRVTKAFGTNPCADSNGDCS
HLCFFRPQGPQCACPMGLELLGDMKTCIVPEAFLLFTSRADIRRISLGTHNNDVAIPLPG
VKEASALDFEVSDNRIYWTDVSLKTISRAFMNGSSVEHVIEFGLDYPEGMAVDWMGKNLY
WADTGTNRIEMARLDGQYRQVLVWKDLDNPRSLALDPANGFMYWTEWGGKPRIVRAHMDG
ANSITLVDKVGRANGLTIDYSDLRLYWTDLDTCMIESSSMLGLQREVIADDLPHPFGLTQ
YRDYIYWTDWNLRSIERADKTNGQNRTVIQGHLDYVMDILVFHSSRQDGSNECVQNNGQC
AHLCLAVPEGYKCGCASHYTLDSNGRNCSSPSSFLLFSQKSAISRMVLDEQSPDIILPIH
GLRNVRAISYDPLDNVIYWVDGRQNIVKRARDDGSQPFVVVSATNHIQNPEKQPHDLSID
IFSRTVYWTCEATNTINVNRLDGKGIGVVLRGEHDRPRALVMNAERGYMYFTNMQERSAK
IERASLDGTEREVLFTTGLIRPVALAIDNTLGKLFWVDADLKRIESSDLSGANRITLQDS
NILQPTGLTVLGEHLYWIDRQQQMIERVDKINGDKRTRIQGRIVHLTGIHAVEEIDTDEF
SAHPCSRDNGGCSHICIAKGDGTPRCSCPVHLVLLQNLLTCGEPPTCSPDQFACSTGEID
CIPMAWRCDGFLECDDHSDEENCPLCSANQFQCEKGQCIESRLRCNGEIDCQDKSDEQNC
DTICRPNQFRCGTSQCILVKQQCDSFPDCSDGSDEMLCELNTETELQTHSSTIGPVIGII
LSLFVIGAMYFVCQRVVCRRYKGPNGPFPHEYISGTPHVPLNFIAPGSSQHGTFTGIPCG
KSMMSSMSLMGSSGSGAPLYDRNHVTGASSSSSSSTKGTFYPQILNPPPSPATDRSLYNT
EMFYSSNSPSTTRSYRPYLMQGIAPPTTPCSTDVCDSDYTTSRWKTNKYYIDLNSDSDPY
PPPPTPRSQYMSAEESCPPSPSTERSYFHLCPPPPSPCTDSS
NT seq
4809 nt
NT seq
+upstream
nt +downstream
nt
atggagactttgttcatcgggttactgctttacagttatttccttctggttggtgcgtct
cctctcctgctctttgcaaacagacgggatgttcggctggtggacgcagggtctgggaaa
ccggagtctgctgtggtggtcagtggtcttgaggacgcagcggcagtggactttgtctac
tcggaggggctgatatactggactgacgtgagtgaagaggccatcaagcaaacccttttc
aatcaatctgggaatgtgcaaactgttatcgtatcgggcctggattctcctgatggcctg
gcttgtgactggttgggaaagaagctgtactggacagactccgaaaccaacaggattgag
gtagccaatctgaatggaacgtcgaggaaagtcctattctggcaagcccttgaccagcca
agagcaatcgctttggatccagcacatgggtacatatactggacagactggggggaggag
ccccgcattgagagagctgggatggacggcagcaccaggaaaatcattgtggactctgac
atttactggcccaatggtctgacgatagacctggacgaacaaaaactttactgggcagac
gcaaagctgagttttatccacagagcgaacctggatggaacctttcggcaaacagtggtt
gaaggcacgttgacgcacccgtttgcactgacgctatctggggaaactctgtactggaca
gactggcagacccgctcgatacacgcctgtgacaagaagaccggggagaagaagagggaa
attctcaatggcatttattctccgatggacatccaggtcctgggccaagagaggcagccc
gacattcgaaccccctgcgatgaaaacaatggaggctgcacccacttatgcctcctgtcc
ccaagagagcctttttacagctgtgcttgtcctactggtgtccagcttcaagaagatggc
aggacctgcaaaccaggggctgaagaagttttattgctagctagaagaacagacttgcga
cgtgtctctcttgatttgcctgacttcacagacattgtgctgcagattgatgacattcgg
catgccatcgctattgactatgatccagtggagggttatgtgtactggaccgatgacgag
gttaaagcaatccgcagatcgctcattgacggcactggggctgagaccctgctcaccact
gaagtgaaccatcctgatgggatagcagtggactgggtggcccgaaacctctactggact
gacaccgggaccgatcgcattgaggtgacgagactaaatggcacatccaggagaatcctc
atatcggaaaatttagacgagccaagagccatcgtactggatcctgtccgtggatacatg
tattggactgactggggtgaaaaaccaaagatcgagcgtgccagcttggacggcagtgac
cgccttgtccttctgaatgactctttgggttggccaaatgggttagcaatagactatgca
gcaggaaagctgtactggggagatgccaaaacagacaaaattgaggtgataaatattgat
ggcactgaccggaggacgcttttagaagataaactgcctcatatatttgggtttacattg
ctgggtgattacatctactggactgactggcagagaaggagcattgaacgtgtccataag
accaaaggcataagagagatcatcatagaccagctgccggatcttatgggccttaaagca
acacgggtgactaaagcatttggaactaacccttgtgcggacagcaatggagattgcagc
cacctgtgtttcttcaggccacagggtccacagtgtgcctgtccaatgggtctggagctt
ctgggcgacatgaagacctgcattgtgcctgaagccttcctgctgttcaccagcagagcg
gacattcggaggatatctctgggaacccacaataacgacgttgccattcctctccccgga
gtcaaagaggcttctgctctggatttcgaagtgtctgataataggatctattggactgat
gtcagtttgaagactataagtcgtgccttcatgaatggcagctctgttgagcatgtgatt
gagtttggactggactaccctgagggcatggcggtggattggatgggaaagaacctttac
tgggccgacacgggcactaaccggatcgagatggcccgtctagatggacagtaccgccag
gtgcttgtgtggaaagacttggacaaccctcgatctctggcgcttgacccagccaatggt
ttcatgtactggactgagtggggaggtaaacccaggatagtgagagcgcacatggatggc
gccaacagcatcactctggttgataaagtgggacgagccaatgggcttactattgactac
agtgacctgaggctgtattggactgacttggacacttgcatgattgagtcctccagcatg
ctagggctgcaaagggaagttattgcagatgatctcccccatccatttgggcttacccag
taccgagactatatctattggaccgactggaacctgcgcagcatcgaacgagctgacaag
accaatgggcagaaccgcacggtaatccaggggcatctggactacgttatggatatttta
gtgttccactcctcccgccaggacggctccaacgaatgtgtgcagaataatgggcagtgc
gcccacctttgtctggctgtacctgagggatacaagtgtggatgtgcgtcacattacact
ctcgacagcaatggcaggaactgtagctccccttccagcttcctcctgttcagtcagaag
tcagcgatcagtcgcatggtgttggacgagcagagcccagacatcatcctccctatccac
ggactgcgcaacgtccgggccatcagctacgaccctctggacaacgttatttactgggtg
gatgggaggcagaacattgtcaagagagcaagggatgatgggtcacagccatttgtagtg
gtctctgcaaccaaccatattcagaaccctgagaagcagccccacgatctgagcattgac
attttcagtcggactgtctactggacgtgtgaagccaccaacaccatcaacgtgaacaga
ctggacgggaaaggcataggagtggtgttgcgcggggagcacgatcgaccaagagccctt
gtgatgaatgcggaaagagggtacatgtacttcacaaacatgcaagagaggtctgctaaa
atagagcgcgcttccctggatgggactgagcgggaggtgctgttcactacaggactcatt
cgacctgtcgctctggcaatcgacaacacgctggggaagctgttctgggtggatgcagat
ctcaaacgcatcgagagcagtgacttgtctggagcaaacaggattactctgcaggattca
aatatcctccagcccacagggctgacagtgctgggggagcacctgtactggatagacagg
cagcagcagatgattgagcgtgtggacaaaatcaacggcgataagagaaccaggatccag
gggaggatagtgcatcttactgggatccacgcagtggaagagatcgacacagatgagttc
tctgcacacccatgttcccgtgacaacggaggctgctcacacatctgcattgcgaagggt
gacgggaccccccgatgctcctgcccagtccacctggtgctgctgcagaatcttcttacc
tgtggagaacccccgacatgttcccctgatcagtttgcctgctccactggggagatcgac
tgtatccccatggcttggcgctgcgacggctttcttgagtgtgacgaccacagcgacgag
gaaaactgcccgctctgctcagccaaccagttccagtgtgagaagggacagtgcatagag
tcccggctgcgctgcaacggggagatcgactgtcaggataagtctgatgagcagaactgt
gacacgatctgccgcccaaaccagttccgctgcggcaccagccagtgcatcctggtgaaa
cagcagtgcgattccttcccagactgcagcgatggatcagacgagatgctctgtgagttg
aacacagagactgaactccagactcacagcagcaccattgggcctgtcattgggatcata
ctgtcgctgttcgtcataggagccatgtatttcgtgtgccagcgagtggtgtgtcgtcgc
tacaaaggacccaatggaccgtttcctcatgaatatatcagcgggactccccacgtccct
cttaatttcatagccccaggaagttcccagcatggcactttcactgggatcccatgtggg
aagtccatgatgagttctatgagtctgatggggagcagtggcagcggcgcccctctgtat
gataggaaccatgtgactggagcatcatccagcagctcctccagtactaaaggaaccttc
taccctcaaattttgaacccacctccatccccagctaccgatcgttccctgtacaatact
gaaatgttttactcttccaatagtccctcaactaccagatcatacaggccctacctaatg
caaggcattgcgccccccaccacaccctgcagcactgacgtgtgtgacagcgactacacc
accagtcgatggaagacaaacaagtactacattgatctgaactcggactcagacccctac
cctccgccccccacccctcggagccagtacatgtctgcggaggagagctgccccccctct
ccctccacagagcgcagctacttccatctgtgccccccaccgccctccccttgtacagac
tcctcatga
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integrated database retrieval system
