Polyodon spathula (Mississippi paddlefish): 121294412
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Entry
121294412 CDS
T07273
Name
(RefSeq) transmembrane channel-like protein 3
KO
K21988
transmembrane channel-like protein
Organism
pspa
Polyodon spathula (Mississippi paddlefish)
Brite
KEGG Orthology (KO) [BR:
pspa00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
pspa02000
]
121294412
03037 Cilium and associated proteins [BR:
pspa03037
]
121294412
Transporters [BR:
pspa02000
]
Other transporters
Pores ion channels [TC:
1
]
121294412
Cilium and associated proteins [BR:
pspa03037
]
Other cilia and associated proteins
Stereociliary proteins
121294412
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TMC
Motif
Other DBs
NCBI-GeneID:
121294412
NCBI-ProteinID:
XP_041074014
LinkDB
All DBs
Position
19:complement(30392321..30408212)
Genome browser
AA seq
1127 aa
AA seq
DB search
MSTVNEPVTITRSARSSKRSQSVRKNSRRIYSHYQDQQASNSDEDDKGDERTDSNDPEEI
FQNIQIQKELIANIRTRLWPMRQKLKVLKQAKEIVLKFEGRLTRTRGYQAAGAEMLKKLS
RLAYNIVVLFIPWEMRIKKIESHFGSGVASYFIFLRWLFGINIVLTVMTGAFVVLPELLA
GAPFGTTSSKTIPKEHLASAQDLDTIWSLGGYLQYSVLFYGYYGKDRKIGNAGYRLPLAY
FMVGMAVFAYSFIILLRKMAKNSRLSFASASDENYTFCWRVFCAWDYLIGNPEAAQSKGA
AIVNNIREAILEEQEKKKDTSLAVLISLRILANILVLLSLAGSIYIIYFVVDRSQKLEQE
KPELTLWEKNEVSVVVSLITMIAPSAFELVAQLEMYHPRTMLQFQLARVLVLYLGNLYSL
IIALLDKVNIMSSAEIYSIPSNWSDSTAFLATIALPEEENLSTIVPDFTESRNSTMSVVF
QENQTKGIIPVAFNKTALYEYNMKSQQNQCWETYVGQEMLKLSIIDMLFTVASILLIDFI
RGLFVRYFSDCWCWDLESKFPEYGEFKIAENVLHLIYNQGMIWMGAFFSPCLPAVNVLKL
IGLMYLRSWAVLTCNVPHQQVFRASRSNNFYLTMLLFMLFLCMLPTIFAIARYRPSATCG
PFSGQEKIYDIISETVASDFPLWFRTVMDYVTSPVVVLPALLLLFMLIYYLQSIARSLKV
TNNQLRTQLQTERTEDKKKVYQMAVSRIITHEANDKKPDQESDITSQESSLRSSSPRRNG
SVMNFESPVSRGNSICTISQSASRSDVSRATTASQIPPVPILQKHRMEHIPNRHPGAFQG
GACRSKSYHSIVYNPSSRFTENAHSDPLFRKNIRPMHPEAMGGGGAQGFINRRAQNTRYV
IVNEHEARKKLLRSSTRILRHYRVEEPGDIVEFYPKNIKRYTVRTPQRSYQPHVSEEEEE
EEEEEEAGGMRRGSLSRSHRPHSLSDLYQPACFYIGDSVGSQLAITKDLAKVHYGAYGDN
CEMDWEDTASQPRSRTKIRSMEQVERHPEPHVKPKRKQKVEPSLTESDSASIASSSDQQN
SSTDQYIQVIHNKEKYLKPSGKLTKKKAKTSVDLNGSGSSELICSNV
NT seq
3384 nt
NT seq
+upstream
nt +downstream
nt
atgtcaactgtgaatgagcctgtgacgattaccagatcagcccgatcttccaaaagaagc
caaagtgtgaggaagaactcgagaagaatctattcacattaccaagaccaacaagccagc
aattcagatgaagatgacaaaggtgatgaaagaactgacagcaatgaccccgaagaaatc
ttccagaatattcagattcagaaggagctcatcgccaacattcgaacccgattgtggcca
atgagacagaaactcaaagtgctcaaacaagctaaagaaattgtcctgaagttcgaaggc
aggctgaccaggaccagaggatatcaagctgcaggagcagaaatgctgaaaaagctgtca
cgcctggcatataatatagtcgtcctttttattccatgggaaatgaggatcaagaagatt
gagagtcattttggttctggagtggcttcatattttatcttcctgaggtggctgtttgga
atcaacattgtattaactgtaatgacgggagcttttgtggtattaccagaactgctggca
ggagcgccgtttggaaccacgagcagcaagaccattccaaaggagcaccttgcatcagca
caagacctggacaccatctggtcactggggggctatctccaatactctgtcctgttttat
ggctactacggcaaagacaggaagattgggaacgctggttaccggctgcccttggcctac
tttatggtcgggatggctgtttttgcctacagcttcatcattctgctaagaaaaatggcc
aaaaactccagattgagtttcgccagcgcctcagatgaaaactacactttctgctggagg
gtgttttgtgcttgggactacctgataggcaaccccgaggctgcacagagcaagggagct
gctatagtgaacaacatccgggaagctattttagaagaacaagaaaagaagaaagacacg
agcctggctgtgttgataagtttaagaatccttgcgaacatcctggtccttctatcactt
gctggcagtatttacatcatctactttgtcgttgaccgttcccagaagctcgagcaagag
aagcctgagctgactctgtgggaaaagaatgaggtcagtgtggtggtctcacttatcacc
atgattgcaccttctgcatttgaacttgttgcccaactggagatgtaccaccccagaact
atgctgcagttccagcttgccagggttcttgtgttgtatctgggaaacctgtacagctta
atcattgctttgttggacaaagtgaacatcatgagttcagctgaaatttacagtattcca
agcaactggtcagattctactgcattcctggccaccatagcactccctgaagaagagaac
ctgtccaccatagtgcccgatttcacggaaagcaggaacagcacaatgagtgtagtgttt
caggaaaaccaaaccaagggaatcataccagtagcgttcaacaagactgctctgtacgaa
tacaacatgaagtcccagcaaaaccagtgctgggaaacctacgtaggacaggaaatgttg
aagctttccattattgatatgttatttactgtggcgagtatcctcctgattgattttatc
cgtgggctttttgttcgctacttcagtgactgctggtgttgggatctggagagtaagttt
cccgaatatggagaatttaaaattgctgaaaacgttctccatttgatttacaaccaaggg
atgatatggatgggcgccttcttttcgccatgccttccagcggtcaatgttctcaagctg
atagggctcatgtacttgaggagctgggcagtgttaacgtgcaacgttccacatcagcag
gtcttcagagcctcaagatccaataatttctaccttacaatgcttttgtttatgctgttc
ttgtgtatgctaccaacgatttttgctatcgctagatacagaccatcagcaacatgtgga
cctttcagtggccaggaaaagatttacgatattatttcagagaccgttgcaagcgatttc
cctttatggttcaggactgtgatggattacgtcaccagccctgttgttgtccttccagct
ctgttacttctcttcatgctgatctattatcttcagtctattgcacgatcattaaaggtc
accaacaatcagctgagaacgcaacttcaaacagaaagaacggaggacaagaaaaaggtt
tatcagatggcagtgtcgagaataataactcatgaagcaaatgataaaaagccagaccaa
gagagtgacatcaccagccaggagtcctctctccgttcctcgtctcccagacgaaatggc
agcgtgatgaatttcgaatcaccagtgagcagaggcaacagcatttgcaccatctcacag
tctgcatcgcgctctgatgtgagcagggcaaccacagcatctcaaatcccaccagttccc
attttacagaaacacaggatggaacacattcctaacaggcatcctggagcttttcaaggt
ggagcctgcagatcaaaatcctaccacagcatagtctacaacccttcaagcaggtttaca
gagaatgcccactcggaccctcttttcaggaagaatatccgtcccatgcacccagaagcc
atgggaggaggaggggcccagggtttcatcaaccggagagcacaaaacactcgctatgtg
atagtcaatgagcatgaagccagaaagaaactgctgcgctcatctaccagaatcttgagg
cactacagggttgaggagccaggagacatagtggagttttatccgaagaatataaaaagg
tacaccgttcgaactccccaaaggtcataccaacctcacgtcagtgaagaggaagaagag
gaggaggaggaggaggaggcaggaggaatgcgaagaggctctttaagcagatcccatcga
cctcactccctgtcagacctctatcaacccgcgtgtttttacatcggtgacagtgtaggc
agccagctagccatcaccaaagacctggctaaggttcactatggagcctacggagataac
tgcgaaatggattgggaagacacagcttcccagcctcgttccagaacaaaaatcaggagc
atggagcaagtggagcgtcacccggagccgcatgtcaaacccaaaaggaagcagaaggtt
gaaccgtccttaaccgagtcggactctgcatccatcgcgtcgagcagcgatcagcaaaac
agcagcactgaccagtacattcaggtcattcataacaaagagaaatacttgaaacccagc
ggcaagcttacgaaaaagaaagcaaagaccagtgtagacttaaacggttcaggatcaagc
gaactgatttgttccaatgtctaa
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