Polyodon spathula (Mississippi paddlefish): 121294469
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Entry
121294469 CDS
T07273
Name
(RefSeq) neogenin-like isoform X1
KO
K06766
neogenin
Organism
pspa
Polyodon spathula (Mississippi paddlefish)
Pathway
pspa04350
TGF-beta signaling pathway
pspa04514
Cell adhesion molecules
Brite
KEGG Orthology (KO) [BR:
pspa00001
]
09130 Environmental Information Processing
09132 Signal transduction
04350 TGF-beta signaling pathway
121294469
09133 Signaling molecules and interaction
04514 Cell adhesion molecules
121294469
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
pspa04515
]
121294469
Cell adhesion molecules [BR:
pspa04515
]
Immunoglobulin superfamily
DCC/UNC5 family
121294469
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Neogenin_C
fn3
I-set
Ig_3
Ig_2
ig
Pur_ac_phosph_N
Ig_DSCAM-DSCAML_C
V-set
Interfer-bind
Tissue_fac
C2-set_2
fn3_2
Sp38
EphA2_TM
NSP2_assoc
TMEM154
Motif
Other DBs
NCBI-GeneID:
121294469
NCBI-ProteinID:
XP_041074115
LinkDB
All DBs
Position
19:22826937..22991298
Genome browser
AA seq
1521 aa
AA seq
DB search
MAEWGARLLLSLSCFTVLSSATVARQADKASGPRQFTPFWFSVEPVDTLAVRGSPVFLNC
SAHSEPPVRVEWKKDGTFLNLATDDRRQLLPDGSLLIPSVVHSKHSKPDEGFYQCVATID
SLGTIISRAARLTVAGLPRFSSQPGASSVTQGDSVVLNCDINVDLVPFTRWELDQEPLDL
DERVVKLPNGTLVVSNASEADAGLYRCVVENVGPVKTSDEAELQVLPDTGTDRRLQFLSQ
PAPVTKARGQDVLLPCVVSGSPAPTVRWMIGDKVIDESEARFKVIGGGSLHVMNLTEEDA
GIYSCLADNGNETIEAQAELTVQAPPQFLKRPSNIYAYESMDIVFECEVTGTPAPTVKWV
KNGDAVIPSDYFKIIKEHNLQVLGLVKSDEGFYQCVAENDVGNIQASAQLIILEHDVSIP
TPPPTSLTSATTDHVAPAGSPGPTPSAPRDVVASLVSTRFIKLTWRPPAEPHGDNINYSV
YYSQEGAARERIENTSRPGELQVTIQNLMPETKYVFRVVAHNRNGPGESSSPLKVATQLE
VQVPGPAPNLRALATSPTSITVSWEMPLSGKGEIQNYKLYYMEKGLGNEQDVDVGGLSYT
INGLKKYTDYSFRVVAYNKHGLGVSTEDVVARTFSDVPSAPPQNLTLEVRNSKSIMVQWQ
PPPPGTHNGQITGYKIRYRKGVRKSEAAESTGGTQLFQLIDGLERGTEYTFRVAAITANG
TGPATDWLTAETFESDLDESRVPDIPSSLHVRPLVTSIVVSWTPPENQNIVVRGYAIGYG
IGSPHAQTIKVDYKQRYYTIENLDPSSHYVLTLKAFNNVGEGIPVYESAATRPLSDPLDP
EVVLYELFNAPYTPVPDPSPMLPPVGVQASVLSHDTIKVTWADNSLPKNQKITDARYYTV
RWKTNIPANTKYKTANTTNLNYMVTGLKPNTLYEFSVMVTKGRRSSTWSMTAYGTTLETT
YPCPMNHMIRGFSLEWTKQSGLVIPAETGMTVLHVCKIAFTFLQPSENESTPNFKKLSYI
PNSPPKDVTVVSKEGRPRTIIINWQPPSEANGKITGYIIYYSTDVNAEVHDWVIEPVVGN
RLTHQIQDLTLDTSYYFKIQARNSKGMGPMSEAVQFRTPKAESSDKMANDQASGPVKPGS
RNTIPHREFGSVGRPSHSGSPTPTLDNNMLLIIIVSVGAFTIIVVVIVAALCTRRTNSQQ
KKKRAACKSANGSHKYKVNSKDLKPPDLWIHHERLELKPIDKSPESNPVMTETPIPHTSQ
DIPPVDTAMDSSILQRRNSYRGHESEDSMSTLAGRRGMRPRMMMPFDAQPPQPVISAHPI
HSLDNSHHHYHCGSLASPAHSYLHHQLNPRPLANSISHIDRANSSELVRNTPGADPVPAV
SQPACSVEQMEPEASFLSSAPEEEPSRNPPTAHVRPSHPLKSFAVPALPPATTLESPALP
STPLLTQTGTTPQVHSVKTASIGTLGRTRSPMPVTVPSAPDVPETCSMLEDADSNYETDE
LTEEMAHLEGLMKDLNAITTA
NT seq
4566 nt
NT seq
+upstream
nt +downstream
nt
atggcggagtggggagcacggttgctcctctctctttcgtgtttcaccgttctttcttcg
gctaccgtggctaggcaggcagacaaagcgtcgggcccgagacagttcacccccttctgg
ttctcggtggagcccgtcgacacgctggctgtgcgcggctcccctgtcttcttgaactgc
tcagcccacagcgagcccccggtgcgggtggagtggaagaaggacggcaccttcttgaac
ctggccaccgacgaccgacggcagctgctacccgacggctccctgctcatccccagcgtg
gtgcactccaaacacagcaagccagatgagggcttctaccagtgcgtggccaccatcgac
agcctgggcaccatcatcagcagggctgcacgcctcacagtcgcaggtcttccaaggttt
agcagccaaccaggagcttcttcggtaacccagggtgacagtgtggttctgaactgtgac
atcaatgtggacctggtgcccttcactcgctgggagctggaccaggagccactggacctc
gacgaaagggtggtcaagctgcctaacggcaccctggtcgtcagcaacgcctcggaggcc
gacgccggcctgtaccgctgcgtggtggaaaacgtcgggcctgtgaaaaccagcgatgag
gctgagcttcaggttctaccagacacgggcacagacaggaggctgcagttcctgagtcaa
cctgcccctgtgacgaaggctagggggcaggacgtgcttctgccatgtgtggtgtcgggg
tcccctgcacccacagtccggtggatgattggagacaaggtcatcgatgaaagtgaggcc
aggtttaaggtgataggaggcgggagtctgcatgtgatgaacctcacagaggaggatgct
gggatatacagctgcttggcggacaacggcaacgaaaccattgaggcgcaggcagaactg
acagtccaagctcctccacagttcctcaagaggccgagtaatatctacgcctacgagtcc
atggacatcgtgttcgagtgtgaggtgaccggcacgcccgctcccactgtcaagtgggtc
aaaaacggggacgcggtcattcccagcgactactttaaaatcattaaagaacataacctg
caggttttagggttggtgaagtcggatgaaggtttctaccagtgtgtggctgaaaatgac
gtggggaatatacaggccagcgctcagcttatcatactggaacatgatgtttccattcca
acaccccctcccacctcactgacaagtgccactactgaccatgtagcaccagcgggcagc
cccggacccaccccctcggccccccgggatgtggtggcatcgctggtatccacgcgcttc
atcaagctcacctggcgcccgcccgcggagccacacggagacaacatcaactactctgtc
tactacagccaggagggtgctgccagggagcggattgagaacaccagccggccaggagag
ctgcaggtgaccatccagaacctcatgcctgaaaccaagtacgtgttccgagtggtggca
cacaacaggaacgggccaggagagagctcctcccctctcaaggtggccacacagcttgaa
gtccaggtccctggtcctgcccccaatctgcgagcgctcgccacgtctccaacctccatc
accgtgagctgggagatgcccctgtcagggaagggagagatccagaactacaagctgtac
tacatggagaagggactggggaacgagcaggatgtagatgtaggaggactttcctatacc
atcaacgggctgaagaaatacacagactacagcttccgagtggtggcatataacaaacat
gggctgggtgtgtccacagaagatgtagtggccaggactttttcggatgttcccagtgct
cctcctcaaaacttaacgctggaagtgcgcaattccaagagcatcatggttcagtggcag
cccccacctcctggcacccacaatgggcagatcacaggctacaagatccgctatcggaaa
ggggtgcggaagagtgaggcggcggagagcacaggcggcacgcagctcttccagcttata
gacggtctggagcgtggcacagagtatacctttcgtgtggctgccattactgcaaatgga
actggcccggcgacagactggcttactgcagagacatttgagagcgacctggatgagagc
cgagtgccggacatccccagctctctgcatgtccggccgctggtcaccagcatcgtggtc
agctggacaccaccggagaaccagaacatcgtggtccggggctacgccatcggctacggc
atcggcagcccccacgctcagaccatcaaggtggactacaagcagcgctactacaccata
gagaacctggacccaagttcccactatgttctgacactcaaagccttcaacaatgttgga
gaggggataccagtgtatgagagtgcggctaccaggccattgtcagacccattagatcct
gaggttgttttatatgaacttttcaatgctccatacactccagtaccagacccttccccc
atgctgccacccgtgggagtgcaggcatcagtcctgagccacgacaccatcaaggtaacc
tgggccgacaactcccttcccaagaaccagaagataaccgacgctcgctactatacggtg
cgctggaagaccaacatccctgccaacaccaagtacaagactgcaaacacaacaaacctt
aactacatggtgaccggactgaagcccaataccctgtatgagttttcagttatggttacc
aagggccgtcgatccagcacctggagcatgacggcttatgggactacccttgagacaaca
tacccctgtccaatgaaccacatgataagaggcttttccctggagtggaccaagcagtca
ggtcttgtcatcccagctgagactggcatgactgtactgcatgtctgcaaaatagctttt
acatttcttcaacctagtgaaaatgagtccacaccgaacttcaaaaagttgagttacatt
ccgaactctcccccaaaagacgtgacggtggtgagcaaggaagggagacctcgaaccatc
atcatcaactggcagcctccgtccgaagccaacggcaagatcacaggctacatcatctat
tacagcacggatgtgaacgctgaagttcatgactgggtcattgagccggtggtggggaac
agactcactcaccagattcaggatttaacccttgatacatcgtattacttcaaaatccag
gcacggaattctaaaggaatgggacccatgtcggaggcggtgcagttcaggactcccaaa
gctgaatcttctgacaaaatggctaacgaccaagcttctggaccagttaaaccaggcagt
cgcaacacaataccacacagggagttcggctctgttgggagacccagccactcggggagc
ccgacccccactctggataacaacatgctgctgattataatcgtgtctgtgggcgccttc
accatcatcgtcgtggtgatcgtggctgccctttgtacccgacgcaccaactcccagcag
aagaagaagagggcagcctgtaaatcagcgaatggctctcacaagtacaaggtcaactca
aaggacctgaaaccaccagacctgtggatccaccacgagaggctggagctgaaacccatc
gacaagtctccagagtccaaccctgtcatgacggagacgcccatccctcacacctctcag
gacatcccgcccgtggacacagccatggacagcagcatcctccagcgacgcaactcctac
cgcgggcatgaatcagaggacagcatgtccacactagcagggcggcgggggatgagaccc
agaatgatgatgcctttcgacgcccagcccccacagcctgtgattagtgctcatcccatc
cattccctcgataactctcaccaccattatcactgcggcagcctggcctccccggcacac
agctatctccaccatcagctcaacccacggccgctcgccaattccatctcccacatagac
agggccaactcctcagagttggtgagaaacacccctggcgctgaccctgtgccggcggtg
agtcagcctgcctgcagtgtggagcagatggagcccgaagcaagcttcctgagcagcgcc
cctgaggaggagcccagccgcaacccccccactgctcacgtgcgcccctcccacccgctc
aagagcttcgctgtgcctgcattgccccccgccaccaccttagagtcccccgcactgccc
agcacacccctgctcactcagacagggaccacgcctcaggtgcactctgtgaaaacagcc
tccatcgggaccctgggaaggacccgttctcccatgccagtcacagtgcccagcgcacct
gatgtacctgagacctgcagcatgctggaggatgcagacagcaattatgagacggatgaa
ctaactgaggaaatggctcatctggagggactgatgaaggacctaaacgccatcacaaca
gcctga
DBGET
integrated database retrieval system
