Polyodon spathula (Mississippi paddlefish): 121294638
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Entry
121294638 CDS
T07273
Name
(RefSeq) dmX-like protein 2 isoform X1
KO
K24155
rabconnectin-3a
Organism
pspa
Polyodon spathula (Mississippi paddlefish)
Pathway
pspa04142
Lysosome
Brite
KEGG Orthology (KO) [BR:
pspa00001
]
09140 Cellular Processes
09141 Transport and catabolism
04142 Lysosome
121294638
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
pspa04131
]
121294638
Membrane trafficking [BR:
pspa04131
]
Exocytosis
Small GTPases and associated proteins
Rab associated proteins
121294638
Endosome - Lysosome transport
Acidification regulators
Rabconnectin-3 complex
121294638
RAVE complex
121294638
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rav1p_C
WD40
WD40_Prp19
WD40_CDC20-Fz
Beta-prop_TEP1_2nd
Beta-prop_WDR90_POC16_2nd
WD40_WDHD1_1st
Beta-prop_IFT140_1st
WDR55
Beta-prop_EML_2
EIF3I
Beta-prop_EML
Beta-prop_CAF1B_HIR1
Beta-prop_HPS5
WD40_MABP1-WDR62_2nd
Beta-prop_LRRK2
Beta-prop_DCAF12
Beta-prop_DCAF4
Beta-prop_Vps41
Beta-prop_SPT8
Beta-prop_WDR19_1st
Beta-prop_IFT122_1st
NBCH_WD40
Beta-prop_VPS8
Beta-prop_WDR19_2nd
Motif
Other DBs
NCBI-GeneID:
121294638
NCBI-ProteinID:
XP_041074490
LinkDB
All DBs
Position
19:27135074..27177319
Genome browser
AA seq
3053 aa
AA seq
DB search
MHLHQVLTGAVNPGDGCYSVGSVNDIPFTAYGSGCDIVILASDFECVQIIPGAKHGNIQV
SCVECSHQLGRIAASYGNTVCIFEPVATNLHKRNNQLNYQWQKTGQFFLSSMTYNLAWDP
QGNRILTATDRLQLWAPPSGDVLLEEDDGQAADDKLPPVLNDWICVWQCKTAVSVHIMKW
SSDGEYFATAGKDDCLLKVWYPTTGWKSAVVIPYLPDRKSDAVHFSFVYLAHPRTVTGFS
WRKTSKYMPRGSVCNVLLTSCQDGVCRLWSETLLPEDSLLGGQITESSTSSSSSLPHLGN
QKDKIQHALETIHHFKHLRRGRRRSSALVAHTDLLPSQLGSHDVHRQISHHANALCHFHI
AASINPSTAIPLAFAGTAFTPDEGNGGFVVHWLNNKELSFTSAMDLFMQQLRKMSEQQVE
QGCEDLDQDILQKFDPELEDVSDKGSSEHEEGEQEGSTKASSPGSSASVPLPTVLLDRKM
EALVNEWNRNPDMLFTIHPVDGSFLVWHVKYLDEYIPGIFRQVQVAFSSRIPVAFPTGDA
NSLSKNIMVYACTVTEEDSSGAGQQKKIKSIPHSASETNALGSGTGHSVVPVISPAVMMV
SKHIDGSLNQWAVTFADKSSFSSVLTVSHKFRYCGHRFHLNDLACHTVLPLLLTSSHHNA
LLTPESENEWDAEKVKQKLQPFKPQKGFSRKQLKNAATRTFHDPNAIYSELILWRVDHIG
PLSCTGGVSELARINSLHTSAFSNVAWLPTLIPSHCLGTYCNSASACFVASDGKNLRLYQ
AVVDARKLLDELSDPEISKLVGEVFNIVSQQSTARPGCIIELDVITNQCGSTTQLLHVFQ
EDFILGYKPRDESVAYEDLESSSFQTEQGYRPPLFSETFFLVVIAKDSNRRSVLQMWHLH
LKSVQACASNTTPEQTFENKLTVPEQNNAESSPDTSPGQSPLPRSSSTANLQSASKLILS
SKLVYSQPLDLPNDVEVIRATPSAGHLSSSSIYPVCLAPYLIVTTCSDSKVRFWHCIVEI
DPSYEDPEEGRIYRWEPWSLMNEEDDSNSAVCVTGRPVAVSCSYIGRLAVAFKQLKQSSG
CISKEFSMNVSIFECESTGGSEWVLEQTIHLDDLANVGHALDPRVSVDSNLCVYSKSDLY
LNKDHHLTPNIKHFVHLDWLSKEDGSHILTVGVGSSILMYGRISGIVNEQTSSKDGVAVI
TLPLGGSIKQGIKSKWILLRSVDLVSSVDGKPSLPVSLSWVRDGILVIGMDCEMHVYAQW
KQDKKRCGETEGDSLSSSENIAGQVDSRGFDTKACAMKHSVFDGPATAGDAFAAPTVLQD
GGLFEAAHSLSPTLPQYHPTQLLELMDLGKVRRAKAILSHLVKCIAGEVAIVRDTEAGEG
GARRHLSRTISVSGSTAKDTIIAGRDGVRDYTEIDSIPPLPLYALLSADLDTSYKIADES
GKVRKGSESQRKLSGDQYEDLFQVQAVTTDDFVSFATEKKESKSRVINLSQYGLTYFGPE
HARVLSSHLMHSSLPGLTRLEQMFLVALADTVATTSTEVGGSREKSCTGGETLDECGLRY
LLAMRLHTCLLTSLPPLYRLQLLHQGVSTCHFAWAFHSEAEEEMLNMIPAMQRGDPQWPE
LRAMGVGWWVRNINTLRRTIEKVAKAAFQRKNDPLDAALFYLAIKKKAVLWGLFRSQHDD
KMTQFFSHNFYEDRWRKAALKNAFSLLGKQRFEQAAGFFLLAGSLRDAIEVCLEKMEDIQ
LAMVVSRLYESDYEASPSYKGILNERVLGCLKDGSGFICSKLHPDPFLRSMSFWIMKDYT
RALDTLLEQIPKEDDENPDVIVKSCNPVVFSFYNYLRTHPLLIRRHFTSPEGSLSTVGLT
AEKSNADEINLIERKLFFTTANAHFKVGCPVLALEVLSKIPKVFKNTGSSLSKDTNVSAS
QPLENGGRASDLDWSQTGAASSTLDWGSSSEAATAVDWSQPLVKLEDDGLQLDWENDKDD
EEDDEDDVGLTMKDSKSDEKITKQKDESIPKPPGLLRGDSAFESEVDVIAEQLKFRACLK
ILMTELRTLATGYEVDGGKLRFQLYNWLEKEIWALHQICNYKVEGKDSTNEVDKWKDSDS
MELEGAVYKSDAGSYERHQLERQRLQAKQEHTERRKGWLRKNQALLRVFLSYCSLHGAQG
GGVASVRMELIFLLQESQQETTVKQLQSPLPLPTTLPLLSASIAATKTVIANPVLHLSNH
IHDIMYTIVQMDSPPHPNIHDDKTYTLHTQAASLSACIYQALCDSHSYSSQTETSQFTGM
IYQGLLLSERRRLRTESIEEHATPSSLPAQWPGVTSLINLVKSAQDEDQPKLNVLLCEAV
VAVYLSLLIHGLATHSSNELFRLAAHPLNNRMWAAVFGGGAKLIVKPKRSPEIAPAPPAR
TEEIDKHRRRFNMRMLVPGRPVKETVVPPPVPAERPTYKEKFVPPELSMWDYFVAKPFLP
LSDSGALYDSDESLPSDDEDDDDAFLSDTQITEHLDPNSYSWALLRLVLVKLALHNVKNF
FPVAGLEFSELPVTSPLGNGVIKTLENWEQILLEKINKFDGPPPNYINTYPSDVSSGGGP
AILRHKAMLEPDNTPFKAKHYLAFPVKRLWHFLVKQDVLQDTLIRYIFTRKRKQSESLED
HVDQLKQNCIAEDHKTCKVEADLGYPGGKAKVIHKESDIIMAFAVNKASNNEIVLASTHD
VQEIDVSTLLAAQPYTWIGEEFDKESRSSDDLDHRSSHTNIAQASAPPFAPSQIPASASM
PWLGSGQTSTGANVIMKRNLNNVKRMTSHPVYQYYLTGAQDGSVRMFEWGRPQQLACFRQ
AGNARVTRLYFNSQGNKCGVADGEGFLSLWQVNQTASNPKPYLSWQCHSKATSDFAFLTS
SSLIATTGQSNDNRNVCLWDTLVSPNNSLVHAFPCHDNGATVLQYAPRQQLVISGGRKGF
ICIFDIRQRQLLHTFQAHDSAVKALAMDSTEDYFITGSAEGNMKVWKLTGHGLIYSFTHE
HAKQSIFRNIGAGVVKIETGPGNRIFTCGADGTLKMRVLPDRYNVPASIFDIL
NT seq
9162 nt
NT seq
+upstream
nt +downstream
nt
atgcatctgcaccaggtgctgaccggagctgttaatccaggagacggctgttactcggtc
ggtagcgtcaatgacattcctttcacggcatatggctcaggatgtgatattgtcattttg
gcaagtgactttgagtgtgttcagatcattccgggtgctaagcatggaaacattcaagtg
agctgcgtggagtgttcacatcagctgggaaggattgcagcctcctatgggaatacagtg
tgtatttttgaaccagttgctacaaatctccacaaaagaaacaatcagctaaattatcaa
tggcaaaagacaggacaatttttcctcagttctatgacctacaatttggcatgggaccca
caaggtaaccggatattaacagcaacagaccgactgcagctttgggcgccgccgtctggt
gatgttcttttggaggaggatgatggtcaggctgcagatgataaattaccaccagtctta
aatgactggatatgtgtctggcagtgcaagactgcagtgtctgttcatattatgaagtgg
tcctctgacggtgaatactttgcaactgcagggaaggatgactgtctattgaaggtgtgg
tatccaaccactggctggaagtctgctgttgtaatcccatatctccctgacagaaagtca
gacgctgtccatttctcctttgtgtacctagcacatcctcggacagtgacaggcttttca
tggcggaagaccagcaagtacatgcctagagggtctgtgtgcaatgtgctgcttacttca
tgtcaagatggtgtctgtcggctctggtccgaaaccttgttaccagaggatagtcttctt
ggtggccaaattactgaaagcagcactagctccagcagcagccttccccatctcggaaat
cagaaggataagatacagcatgctctggagacaattcaccactttaaacatctgagaaga
ggtcggaggagatcttcagctctggtcgcccacacagacctgttgccgagccagcttggc
tcacatgatgtgcacaggcagatttctcaccatgctaatgcactctgccattttcacatt
gcagcaagtatcaaccctagcacagctattccactggcttttgctgggacagctttcaca
cctgatgaaggaaatgggggctttgttgttcattggcttaacaataaggaacttagcttt
acatctgccatggatttgtttatgcagcaactaagaaagatgtctgagcagcaggtggaa
caaggatgtgaagaccttgatcaagacattttacagaagtttgatcctgaactggaagat
gtttcagataaagggtcatccgagcatgaagaaggggaacaagaaggaagtaccaaggca
tcatcccctggctccagtgctagtgtgccactccccacagtgctgcttgatcggaaaatg
gaggcacttgttaatgagtggaacaggaatccggatatgctttttacaattcatcctgtt
gacggctcatttttagtgtggcatgtaaagtacttagatgaatacatcccaggaatcttc
agacaggtccaggttgcattttcttctcgcattccggtagcttttcccactggagatgct
aactcgctcagtaaaaacatcatggtgtatgcttgtacagttactgaagaagattcaagt
ggtgctgggcaacagaagaaaattaaaagcattcctcacagtgcatcagaaacaaatgca
cttggctctggaactggccattcagtggtgcctgtcattagtcctgcagtaatgatggtg
tcaaaacacatagatggatccctgaaccagtgggctgttacttttgcagacaagtcttcc
ttctcatcagtattgactgtctctcacaaatttagatattgtggacatcgcttccatctt
aatgacttggcctgtcatactgtacttccattgttgctgacttcttcacatcataacgct
ttgttaacgcctgaatcagagaacgaatgggacgctgaaaaagtgaagcaaaaactacag
cccttcaaacctcagaagggtttctcgagaaagcagctgaaaaatgcagcaactcgaaca
tttcatgaccccaatgcaatctacagtgagctgattctctggcgtgtggatcacatagga
cccttatcatgcacaggaggggtgtctgagttggcacgaattaactctctgcatacttca
gccttttctaatgtcgcttggcttccaactctgataccaagccactgtcttggaacttac
tgcaattctgcaagtgcttgctttgtggcttccgatggcaagaaccttcggctctaccaa
gcagtggttgatgctcgaaaacttttagatgaactttcggatcctgagatatctaaactt
gttggtgaggtctttaatattgtcagccagcagtctacagctcgtcctggttgtattatt
gaacttgatgtcattacaaaccagtgtggctcaaccacgcaacttcttcatgtctttcaa
gaggatttcatcttgggttataaaccacgtgatgagtctgtagcttatgaggatctagaa
tcttccagttttcagacagaacaagggtaccgccctccactattttcagaaacgtttttt
cttgtggtaattgcaaaggacagcaatagacgttctgttcttcaaatgtggcatctccat
ttaaaatctgtgcaggcttgtgccagtaatacaacacctgagcagacgtttgagaacaag
ctcactgttccagagcaaaacaatgcagagtcttctccagatacctcccctggccaaagc
cctcttccacgctcttcttcaacagctaatcttcagtctgcgagcaagcttatcctgagt
tccaaattagtatacagccaaccgctggatcttcccaatgacgttgaagttatccgtgct
acaccttcagcagggcatcttagctcctcgtcaatttacccagtctgtctcgctccctat
ttaatagtgacaacctgctccgacagtaaggttaggttttggcactgcattgtggaaatt
gatccaagttatgaagatcctgaagaaggacgcatttaccgatgggaaccatggtcttta
atgaacgaagaagatgacagcaacagtgcagtgtgtgttacagggaggccagtggctgtc
agctgttcttacattggtcgccttgcagttgcttttaaacagctaaagcaaagcagtggt
tgtatatcgaaagagttctcaatgaacgtgtctatatttgaatgcgagtcaactggaggg
tctgagtgggtgttagaacagactattcacttagacgatttagcaaatgtgggacatgct
ctggaccccagggtcagtgttgatagtaacttgtgtgtatatagcaagtcagatttgtac
cttaacaaagaccatcacctgactccaaatataaaacattttgttcaccttgactggtta
tccaaagaagacggctcacacatactgactgtgggggttggatccagcatattgatgtat
ggcagaatttctggcattgtaaatgaacaaaccagcagcaaagatggtgttgctgtgatt
actctaccactaggtggaagcattaagcaaggaataaaatccaagtggatccttctgaga
tccgtggacttggtatcctcagtggatggcaaaccttccttaccagtgtcactgtcttgg
gtaagggatgggatactagtaataggaatggactgcgaaatgcatgtctatgcccagtgg
aaacaagacaagaaacgctgtggtgaaactgagggtgacagtctgtcatcttctgaaaac
atagcaggccaggttgactcaagaggatttgacacaaaagcctgtgcaatgaaacacagt
gtttttgatggacctgctactgcaggtgatgctttcgcagctcctactgttcttcaggat
gggggtctgtttgaagctgcacattctctttcacctactcttccccagtaccatcccacg
caactcttggagctcatggacttagggaaagttcgcagagcaaaagccattctttctcat
ttggtgaaatgcattgctggggaggtggcgattgtgagagatacagaggcaggagaagga
ggagccaggcgacacctttctcggaccatcagtgtaagtggcagtacagcgaaggacaca
atcatagctggaagagatggagtccgtgactacactgaaattgactcaattccgccattg
ccattatacgccttgctgtctgctgacttggacacgtcctataaaattgcagacgaaagt
ggaaaagtgcgcaaaggctcagagagtcaacgaaagctatcaggagatcaatacgaagac
ctgtttcaggttcaagctgtgaccactgatgactttgttagctttgctactgaaaaaaaa
gaaagcaaatccagagttattaatttgtcacaatatggtctgacatactttggcccagag
catgctcgagttttgtcaagccatctgatgcattctagtttaccagggctaactcgcctt
gagcagatgttcctggtcgcattggctgacactgtggctacaacaagcactgaagttggt
ggaagcagagaaaaaagttgtacaggaggggaaacacttgatgaatgtggtctccggtat
ttgctagccatgcgcttgcatacatgtttgctgacatcactaccgcctttataccgattg
cagctgttacaccaaggtgtttctacctgtcattttgcttgggcttttcactctgaggca
gaagaagaaatgctgaatatgatcccagcaatgcaaagaggagatccacagtggcctgag
ttgcgagccatgggagttggctggtgggttcgaaatattaatacactacgaaggaccatt
gagaaggttgcgaaagctgcatttcaaaggaaaaatgatccattagatgctgcattgttt
tatctcgctataaagaagaaagcagttctttgggggttgtttaggtctcagcatgatgat
aagatgacacagtttttcagccacaacttctatgaagatagatggcgcaaagcagcttta
aaaaatgccttttctttactgggaaaacagcgctttgagcaggctgcaggcttcttttta
ctggctggctctttgagagatgctattgaggtttgtcttgagaaaatggaagacatacag
ctggccatggttgtttcacgtctgtacgagtcggattatgaagcatccccctcctacaag
ggtatcctcaatgaaagggtactaggctgtttaaaagatggttctggcttcatctgcagt
aaactacaccctgatcctttcctgcgcagtatgtcattctggataatgaaagactacaca
agggcactggatacattattagagcagattccaaaggaagatgatgaaaatccagatgtg
attgtgaaatcttgcaacccagttgtcttcagtttctacaattatttacgaacccatcct
ctgctgatccgaagacatttcacatcaccagaagggtcattgtccaccgtaggacttaca
gctgagaaaagcaatgccgatgaaatcaatcttattgagagaaaactgttctttacaact
gcaaatgctcactttaaagtgggttgccctgtactggctcttgaggtcctttctaaaata
ccaaaagtctttaaaaacacaggatcctctctaagcaaagacacaaatgttagcgcatca
cagccactagaaaatggcggaagagctagtgacttggattggtcacagactggggcagca
tcctctactctagactggggaagcagcagtgaagctgctactgctgttgactggagccaa
cctctcgttaaattggaagatgatggattgcagctcgactgggaaaatgacaaagatgat
gaggaggatgatgaggatgatgttggtttaaccatgaaggattccaaatctgatgaaaag
attacaaaacagaaagatgagtcaataccaaaacctccaggtctactaaggggtgattct
gccttcgaatctgaggttgatgtcattgcagaacagctgaaattcagagcatgtttgaaa
atactgatgactgagctaaggacattggctacaggttatgaggtggatggagggaagctc
aggtttcagctttacaactggttagaaaaggagatctgggcactgcaccaaatctgtaac
tataaagtagaagggaaggattccacaaatgaagtggacaaatggaaagacagtgattca
atggagctggaaggtgctgtctacaagtctgatgctgggtcgtacgaacgtcaccaatta
gagcgtcagaggttacaagcaaagcaagaacatactgaaaggcgcaagggctggctgaga
aagaatcaggcacttctccgagtgtttctgagctactgtagcttgcatggtgcacaggga
ggtggtgttgcatcagtaagaatggagctcatctttttgttgcaagagtcacagcaggaa
accacagtgaagcagctacagtctcctcttccattaccaacaacactgcctttactttcg
gcaagcatagctgcaaccaagacagtcattgccaacccagttttgcacctgagtaaccat
atccatgacattatgtatactatagttcagatggactctccacctcatccaaacattcac
gatgacaagacttacacattacacactcaggcagcctcactttctgcttgcatctatcaa
gcgctctgtgatagtcacagctacagcagtcagacagaaacaagtcagttcacaggaatg
atttatcaaggcttattattaagtgaaagacggagattacggacggaaagcattgaggaa
catgcaacaccaagctctcttcctgcccagtggccaggtgtcacatcactcattaacctt
gtaaagtcagctcaggatgaggatcagcccaagctgaatgtgttgctatgtgaagcagtt
gtggctgtctacctcagtttgttgatccacggtcttgccacccattctagcaatgaactt
tttcgattagctgcccacccgctgaataatagaatgtgggcggcagtgtttggcggagga
gcaaaactgatagtcaaacctaaaaggtcaccagaaattgcaccagctcctcctgctcgc
acagaagaaattgataagcatcgtcgtagattcaatatgagaatgctagtgcctggcagg
ccagtgaaagaaactgtggttcctccacctgtacctgcagagaggccaacctacaaagag
aagtttgtccccccagaactcagcatgtgggattactttgtagcaaaaccatttcttcct
ctttctgatagtggtgctttgtatgattccgatgaaagtcttccaagcgatgatgaggat
gatgatgatgctttcctttccgacactcaaataacggagcacttggatcctaattcatac
agttgggcactgttgcgattagtactggtcaagctggctctacacaatgtgaagaatttc
tttcctgttgcaggactggagttttcagaacttcctgtaacctcacctttgggcaatggt
gttataaaaactttggaaaactgggagcagattcttcttgaaaaaattaacaagtttgac
ggccctccgccaaattacataaacacctatccaagtgacgtcagttctggagggggacca
gcgatactaagacacaaagccatgcttgaaccagacaacacccctttcaaggctaagcat
tatttagcttttcctgttaaacggctgtggcatttccttgtgaaacaagacgttcttcaa
gacacacttattcgctacattttcaccagaaagaggaagcagagtgagtcattagaagac
catgtggaccaactcaaacaaaactgcatagcagaagatcacaaaacctgcaaggtggag
gcggaccttggttatccaggtggaaaagctaaagtcattcacaaggaatcagatattata
atggcctttgcagtcaataaggccagtaataatgaaattgtgctagcatctacacatgat
gtgcaggaaattgatgtctctactcttttagctgcacaaccatacacctggattggagag
gagtttgacaaagagtccagaagctccgatgatcttgatcatcgctcctcccatacaaac
attgcccaggcaagtgcacctccatttgcacccagtcaaatccctgcgtctgcatcgatg
ccctggttaggcagcgggcaaacaagcacaggcgctaatgtgatcatgaaaagaaatttg
aataatgtgaaaagaatgacatcacatccagtttaccagtactatttaactggagcccag
gatggaagtgtacggatgtttgagtggggtcgtccacagcaacttgcatgttttcgccaa
gctggcaatgcaagggttacacgattgtacttcaattcccaaggcaacaagtgtggggtt
gcggacggagaagggtttttgagcctttggcaagttaaccaaactgcatcaaatccaaaa
ccttatttgagctggcagtgtcacagtaaagccacaagtgactttgccttcctcacctcc
tcaagcctcatagccacaaccggacaatccaatgataacagaaatgtgtgtttatgggat
actctagtttcaccaaataatagtctggtacatgctttcccttgtcacgacaatggggcc
acagttcttcagtatgcacccaggcaacagctcgtcatctctggaggcaggaaaggcttc
atctgcatttttgacatcagacagagacagctgcttcacacctttcaagcacatgattct
gctgttaaagctctcgcaatggactccactgaggactactttatcactggctccgcagaa
ggaaacatgaaggtgtggaaattaacaggccatgggttgatttattcatttacacatgaa
catgccaagcagtccatattcagaaacattggtgctggggtcgtgaaaattgaaactggg
ccaggaaatcgcatctttacatgtggagcagatggaactctgaaaatgagggttttgcct
gaccgctacaatgtacctgctagtatatttgacatcctgtaa
DBGET
integrated database retrieval system
