Polyodon spathula (Mississippi paddlefish): 121294641
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Entry
121294641 CDS
T07273
Name
(RefSeq) spatacsin-like isoform X1
KO
K19026
spatacsin
Organism
pspa
Polyodon spathula (Mississippi paddlefish)
Brite
KEGG Orthology (KO) [BR:
pspa00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pspa03400
]
121294641
DNA repair and recombination proteins [BR:
pspa03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
Other HR factors
121294641
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Spatacsin_C
Actin
DUF5577
Motif
Other DBs
NCBI-GeneID:
121294641
NCBI-ProteinID:
XP_041074494
LinkDB
All DBs
Position
19:32974685..33010427
Genome browser
AA seq
2445 aa
AA seq
DB search
MIDDSVLKNGGLEVLLSSEQSCCEHVKHTLKAKVTKGFSTLCCLNANKGLDFTDIFDSGQ
QCNERSVEGNFTNFIWEDSLADDECTLRLLALGADNELCLYELEREDEGGGAGAVTVLCS
CTEHTLRQLVEAEHLSLSSSLSFRLLSYQNNKAFVLLNNCILLHLLFSETGAEPEVLNCS
TIDVLPQALERIADCQICAGVLFVLDNTGHIYIYDTAHGQHLASVDLCLYQTSLVEQNED
PCSLSSFALLKVSHDLITAVAVTCFNSVICVDFNDYFRKHPEHLLCVRAPDQLPLKGLDG
VDEDNLSSSDYSKTLLGVSFQTNRSWDAQLSVLYNDGKASSPSDCATKLCAPWYHHLPNA
EPTKHSDLTKSQVSATVSNYTACILSCAAWKRTGRSSEPLPCKRQGFVQLQGLRERMTPA
TVSVSEFTVLLTFVSSDSAVTVAFWDLQTQDVTYHHLDPGCTPVQCSGEEQLCLVMKESG
LSVILFGFTQEELLSRLMIHGSAGTVDLLCHLNSWGRCCIPAHALEAGLKNRQLDTVDFF
LKSKENILCPPAGYTLPEQPGTTPTHLQLKNVEDLRPALTLLSSAIKDNDSEAQSKQFSE
QLLNMTLTFLNKQVREILINTEELNEDLQKCVDILSNYISELRTFMKKFPRPQPDETEPW
HGVDGGHLEIEHLQEWQKLSSADVIRSAIMSNRIPEAQAFFRSRQNKAERLEELLQIGLN
LAYECLLGRELKEASELLRNMGFSVKKQLHSICFYTDDRDLRDFLVDNLQKHNYLSDREI
AMVEFIKQVEGQCFSPAKPTKDIKPNVIPLQMQQNDPKYKTILDKSMNSQDLLQHTEIST
VLLDWARWWDKNIQENILLSRMSKEGLQSCDPEVLWMHLTSLHDRQRVHDWVETFKPLAD
EPSDQSQWPALTAEIVNHCTLCSGRMRNEILDLLARRGVFIPSERADLEKLLVRLGHAGG
VMQETQPVPGYHSSDGLDFHSHFIHYCLENSLRYLLYVYLEYYQLDQSNCPILKDEDLYE
AHPWFELLVKIQEIIRNPRDPSIIFQSSLTNAQIQIPSNQASVSSMLLEGHTLLGLATIM
FAPGGFDQVVSAKEEEDDSLWKVDPQLLKMALAPYPKLKSALFPQTTPRGVPPPDISVYH
LVQSLFPFDSSRQFGWQSANTLATVDTSSELPHFSCLDLVNKYAITERLDFLYYLRHGRP
SFAFGTFLVQQLSKNNSTAREQMTQAAMEAYKLGLLYFDESPVAAACVCFYELLGLSSLK
FRVDLKVANLILKHWTRSTEESQNTSLREALAEKLQKLVETEKQTAEELLIHVEAAVLDN
LERRNISRTSYESGQEWSLVAEFCRLHAVTLSTAYLQDCARQNEWLQFLTFIQLHNYQPE
QVKALLKEFSPALKDHLSLAFDNLQFVPPSDEENDQGHPEAARPVLQNKKEKPHDLFQAL
LLSQDQPSPWRYLLSEALGQHCPVLSVLAACVQDSEILQCLCVWVLSSVDDITIAEATSH
IQESVEHHEWNLHDLSLIWKVLVRRQRIKSLIRGFQLFQKDSPLVYMLQMYELCNDYKNY
SEAKTKLLLFQKCLISLKTMSPKAPAVIPVQWLEVQALSLLHMMMQQCRTQYELRKLLQL
LADMDSILKTNGPDFKKLSILSEILQDTRISISLPDLASSPAESLQNECRRVLGQLLEEG
LFPLARRVAELAELPVDSLVIQELIQELRTLKEHRQWERKETRINFWRKCNDRFQSNGIN
SMAVSEFFLARAEAVQMEECPLETRIVSLQERWLLLTMAGYWLARQDPVPVEQLEEMEKR
IWLCRIRQEALLTATESTTTFFRPVSVAGDCSFEVLIKEFSFSKLGVLNCPEYLKLEGLP
AKEASETRLDATEREALAALIGKLLDGGCIHEASRVCRYFDFFHRDVSLVLHCRALASGE
AKRNDLHPTIQVILTAGVTMGLEGGTRRMPIPGTVSVGSCSSFDMVLQPEDQLIKELQIL
ADECHHGKNYCRQVLSLFQLSQELGCSYSEISAQDWETVLREVLRSQQPDRYKRAQAFIT
IQGMETEAVAELVSGEVVQALVSSAEGAETAVRQKQIYNPGNGKEAFLQLAKLCQDPNLV
GTKLLDKISSMPHGELACTVDLLVLAHDCFSLTCHMEGIVRVLQAARHLCHNHLAPSEKY
SLMVRLLTGIGRYNDMTYIFDLLHQNHRFEMLLRKKVESNATLKTALLDYIKRCHPGDSE
KHNMVALCFSMCREIGENHEGAARTQLKLIESQPWTVTPELKKSLVKVLTLLKDAAESYS
KDCCARQALRCIKLAKLVTLQLHFLNNNQDRRLINLPRQDLLEAMISLPSFYQAFVVAEA
YNFIPDWAEVLYQQVIVRGDFTYLEEFKQQRLLQASLFEEISKKFKQHQQHTDTTASQNL
KKLLKYCEDIYIYYKLAYEHKFFDVANMLLQDTKTSCYLNDKLAS
NT seq
7338 nt
NT seq
+upstream
nt +downstream
nt
atgattgacgattcggtgttgaagaatggcggtcttgaagtcctgctttcatctgagcaa
tcatgttgtgaacatgtaaaacacacactgaaagcaaaagttacaaaaggcttctcaacg
ctctgctgtttaaatgctaacaagggacttgactttactgatatttttgacagtggacaa
cagtgcaacgagagaagcgttgaaggtaacttcacaaattttatttgggaagactctctt
gctgatgatgaatgcaccctgagactgttggcccttggcgcagataacgagctctgcttg
tatgagctggagcgtgaggatgagggtggtggcgcaggtgctgttactgtcctctgcagc
tgcactgagcataccttgagacagctggttgaagctgaacacctgagcctttcttcatct
ctgtcctttaggctcctgtcatatcagaataataaagcctttgtgctgctgaataactgc
atccttcttcaccttctcttctctgagactggagctgagcctgaggttctcaactgcagc
actattgatgtgcttccccaggccctggagagaatagcagattgccagatctgcgcaggg
gttctgtttgtactggataacaccgggcacatatatatttatgacactgcccatggccag
caccttgccagtgttgatttgtgtctgtatcagaccagtttagtggagcagaatgaagat
ccatgcagcctgtcttcctttgccctcttgaaggtgtcacatgacctgatcactgctgta
gcagtcacatgttttaactctgtaatatgtgttgacttcaatgactatttcaggaagcat
cctgagcacttgctgtgtgtgagagctccggaccagctccccctgaaaggactggatggt
gttgatgaggacaacctgtccagctcagactacagcaagaccttgcttggagtttcattt
cagaccaacaggtcctgggatgcccagttatcagtgttatacaacgatgggaaggcttct
tcaccttcagattgcgccaccaaactgtgtgctccttggtaccatcaccttcccaacgct
gaacctaccaaacactctgatttaaccaaatctcaggtgtcggccacagtttccaactac
actgcctgtatactgagctgtgctgcatggaaaaggactggcagaagcagcgagccccta
ccttgcaaaagacaagggtttgtgcagctccagggcttacgggaacgcatgaccccagcg
accgtttcagtgtctgaatttactgtcctgctgacctttgtttccagtgactctgcagtg
actgtagcgttctgggatcttcagactcaggatgtgacctaccaccatctcgaccctggc
tgtactccagtgcagtgtagcggtgaggaacagctgtgcctggttatgaaagagtctggt
ctgtctgtgatcctgtttgggttcacccaagaggagctcctgagcaggctgatgatacac
ggcagcgcaggcacggtggacttgctgtgtcacctcaacagctggggaaggtgctgcatt
cctgcccacgctctggaggctgggttgaagaatcgtcagctggatacagttgattttttc
cttaaaagtaaagagaatatcctctgtccacctgcgggatatacattaccagagcagcct
ggaaccaccccgacccatcttcagttgaagaatgtggaggacctgagaccagcacttact
cttctgagctccgcaatcaaagacaatgactctgaagcccagagtaaacaattctcagag
cagctgctgaacatgactttaacgtttctgaacaagcaagtcagggagattctcattaat
acagaagagttgaatgaggacctgcagaagtgtgttgatattctgagcaactacatctca
gagctgcgcaccttcatgaagaagttccctcggccccagcctgacgagaccgagccctgg
catggggttgatggaggccacctggagatcgaacacttgcaggagtggcagaaactcagc
tctgctgatgttattcgcagtgctatcatgagcaatcgcatccctgaggcccaggccttc
ttcaggtctcggcagaacaaggcagagaggctggaggagctgctgcagataggactcaac
ttggcgtatgaatgcctgttagggagagagctgaaagaggcttcagagctcttaagaaat
atgggattcagtgtgaagaagcaattgcacagtatatgtttctatacagatgatagagat
ctgcgggattttttggtggacaatttacaaaagcataactatttatcagacagggaaatt
gccatggtggagttcattaaacaggttgaaggacagtgtttctcaccagcaaaaccaact
aaagacatcaagcccaatgtcatacctctgcagatgcaacagaatgacccaaaatataaa
actattctggacaaaagcatgaactcccaagacctcttgcagcacactgagatttccaca
gttttgctggactgggcaaggtggtgggataaaaacattcaggagaatatccttctttca
agaatgtccaaggaaggtctgcaatcctgtgatcctgaagtcctgtggatgcacctcaca
tctctccacgatcgacagagagtccatgattgggttgaaaccttcaaaccgctcgctgac
gagccttcagatcaaagccaatggccagccttgacggcagaaattgtcaatcactgcaca
ctttgcagcggccgcatgaggaatgaaatactagacctgctggcaaggaggggagtgttc
atcccgtctgaacgagctgatttggagaaactcctggtgaggctgggccatgctgggggg
gtgatgcaggagactcaacccgtcccagggtatcactcctctgacgggttagacttccat
tcacacttcatccactactgtctggagaacagcttgcgatacctgctctatgtctatctg
gaatactaccagctagaccaatccaattgtcccattctgaaggatgaggatttgtatgaa
gcacacccctggtttgagttgttagtgaaaatacaggaaatcattagaaacccaagagac
cccagcattatttttcagtccagcctgacaaatgcccagatccagatacccagtaaccag
gccagtgtgagcagcatgctgctggaggggcacaccttgctgggcttggcaaccatcatg
ttcgctccgggaggctttgatcaggttgttagtgccaaagaagaggaagatgactcccta
tggaaagtggacccgcagctcctgaaaatggccttggctccctaccccaaactgaaatcg
gcgctgttcccacagaccactcctcgaggcgtcccgcccccggacatctctgtctatcac
ctcgtccagtctttgtttccgtttgattcttcaaggcagtttgggtggcagtcagccaac
actcttgcgactgttgatacatcgagcgagttgccccacttctcctgtcttgaccttgtg
aacaagtatgccattaccgagcgcttggatttcctgtactatctgcgccacggccgccca
tccttcgcttttgggacctttctggttcagcagttatcaaaaaacaattctactgcaagg
gagcaaatgacgcaggcagccatggaagcatataaactgggtctcctctactttgacgag
tctccagtggctgcggcatgcgtttgcttttatgaattactgggtctcagcagcctgaag
ttcagagttgatttaaaagttgcaaatttgatcctgaagcattggaccagaagcactgaa
gagtcacagaacacctcgcttagagaagctttagctgaaaagctgcagaagcttgtagag
actgaaaaacaaacagcagaagagttattgatccatgttgaagctgctgtgctggataac
cttgagagaaggaacattagcaggacctcgtatgagtctggtcaggagtggtctctggtg
gctgagttctgcaggcttcatgctgtgaccctgagcacagcttacctgcaggactgtgcc
agacagaatgagtggctgcagttcctcaccttcatccagcttcacaattaccaaccagag
caagtaaaagcactgctgaaggagtttagcccggccctgaaggatcacctctctctggct
tttgataatctgcagtttgtgcctccaagtgatgaagagaacgatcagggacacccagaa
gctgccaggcctgtcctgcagaacaagaaagagaagccccatgatctgttccaggcgctg
ctgctgagccaggaccagcccagcccgtggcgctatcttctatccgaggccttgggtcag
cactgccctgtcctcagtgtcctggctgcctgcgttcaggattctgagatcctgcagtgt
ctctgcgtctgggttctttcttcagtcgatgatatcacaattgctgaagctacaagccac
atccaagagtctgtggaacaccatgagtggaatctccatgacctgtcactcatctggaag
gttctggtgagaagacaaaggattaaatccctgatcagaggcttccaactcttccaaaag
gactccccgctagtgtacatgttgcaaatgtatgagctgtgcaacgattacaaaaactac
agcgaagcaaagaccaagctcctcttgttccagaagtgcctgatcagtctgaaaaccatg
agcccaaaggctcctgccgtgataccggtgcagtggctggaggtccaggcattgtctctc
ctgcacatgatgatgcagcagtgtcggacgcagtacgagctgagaaaattgctgcagctg
ctagcagacatggacagcatcctgaaaacaaacggcccagatttcaagaagctgagcatc
ctgagtgagatattacaggacacacggatctccatcagcctcccggacctggccagctcc
cccgcagagagcctgcagaatgagtgcaggagggtcctgggccagctgctggaggagggg
ctcttccctctggctcgacgggtggctgaactggccgagctccccgtggacagcctggtg
atccaagagctaatacaagaactacggactttgaaagagcacaggcagtgggagagaaag
gaaacccgaattaatttttggaggaagtgcaacgatcgatttcaaagcaacggcattaac
agcatggcggtgtccgagttcttcctggctcgggctgaagctgtgcagatggaggagtgt
cccctggaaacgcggatcgtgagcctgcaggagaggtggttactgctgaccatggctgga
tactggctggcccgacaagaccctgtgcctgtcgagcagctggaagagatggaaaagaga
atatggctgtgccggattcgccaggaagccttactgacagccacagaatcgaccaccacg
ttcttccgtcctgtttcagttgctggtgactgttcctttgaggttctaatcaaggagttc
tctttctccaagctgggggtgctaaactgccctgagtacctgaagctcgagggtctgccg
gccaaggaggcttcagaaacgaggctggatgccacggagagagaagctctggctgccctg
attgggaagctgctggatggggggtgtatccacgaagccagccgcgtctgcaggtacttt
gacttcttccaccgggatgtgtctctggtgctgcactgcagagccttggcatcgggagag
gcgaagaggaacgacctccaccccaccattcaggtgatcctcactgcaggagtcacaatg
gggctagagggaggcaccaggaggatgcccatcccaggcacagtgagcgtgggcagctgc
tcctccttcgacatggtgttgcagccagaagaccagcttattaaggagctacagattctt
gcagatgagtgtcaccatgggaagaattactgcaggcaggtcctgagcctgttccagctc
tcccaggagctgggatgttcatacagtgagatctcggcccaggattgggagactgtcctg
cgggaggtgctgcggtcccagcagcccgaccggtacaagagagcccaggccttcatcacc
atccagggcatggagacggaggctgttgcagagctggtttcgggagaggtggtgcaggcg
ttagtgagctctgcagagggggcagagacagctgtgaggcagaagcagatttacaatcct
ggcaatgggaaagaggcatttctgcagcttgctaagttatgccaggacccgaaccttgtt
ggcacgaagctgctggataaaatctcctctatgccccacggagagttggcatgcactgtg
gatctgctggtcctggcacatgactgcttcagcctgacctgccacatggaggggatcgtg
cgggtcctgcaggcagcgagacacctctgtcacaaccacctggcgcccagcgagaaatac
agcctcatggtgcggctactcactggaattggcaggtacaatgacatgacctatatcttt
gacctgctgcaccagaaccaccgctttgaaatgctgctcagaaagaaagtggagtcgaat
gccacgttgaagacggccctgctggattacatcaagcgttgtcaccctggggatagcgag
aagcacaacatggtggcgttgtgtttcagcatgtgccgggagatcggggagaaccacgag
ggggcagctcgcacccagctcaaactgatcgagtcccagccctggacggtgacacccgaa
ttgaagaagtccttggtcaaagtcttgacccttttgaaagatgcagctgaaagttattcc
aaggactgctgcgcccgtcaggctctgagatgcatcaagctggccaagcttgtcaccctg
cagctgcacttcctcaacaacaaccaggacagaaggctaatcaacctgcccaggcaggac
ctgctggaggctatgatctccctgccgagcttctaccaggcgtttgttgttgccgaggct
tacaacttcattcctgattgggcagaagttttataccagcaagtgattgtgcgaggggat
ttcacctacttggaggagtttaagcagcagaggctcctgcaagccagcctgtttgaggaa
atatccaaaaaattcaagcagcaccagcagcacacagataccactgcaagtcagaatctc
aagaaactgctgaagtactgtgaggacatctatatctactacaaactggcatacgaacac
aagttttttgatgtagcaaacatgcttttgcaagataccaaaacaagctgttacctaaat
gacaagcttgcaagctag
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