Polyodon spathula (Mississippi paddlefish): 121294702
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Entry
121294702 CDS
T07273
Name
(RefSeq) E3 ubiquitin-protein ligase NEDD4-like isoform X1
KO
K10591
E3 ubiquitin-protein ligase NEDD4 [EC:
2.3.2.26
]
Organism
pspa
Polyodon spathula (Mississippi paddlefish)
Pathway
pspa04120
Ubiquitin mediated proteolysis
pspa04144
Endocytosis
pspa04530
Tight junction
Brite
KEGG Orthology (KO) [BR:
pspa00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
121294702
09140 Cellular Processes
09141 Transport and catabolism
04144 Endocytosis
121294702
09144 Cellular community - eukaryotes
04530 Tight junction
121294702
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
pspa04131
]
121294702
04121 Ubiquitin system [BR:
pspa04121
]
121294702
03029 Mitochondrial biogenesis [BR:
pspa03029
]
121294702
Enzymes [BR:
pspa01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.26 HECT-type E3 ubiquitin transferase
121294702
Membrane trafficking [BR:
pspa04131
]
Endocytosis
Clathrin-mediated endocytosis
Ubiquitin E3 ligases
121294702
Ubiquitin system [BR:
pspa04121
]
Ubiquitin ligases (E3)
HECT type E3
121294702
Mitochondrial biogenesis [BR:
pspa03029
]
Mitochondrial quality control factors
Mitochondrial dynamics
Morphogenesis factors
121294702
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HECT
WW
Motif
Other DBs
NCBI-GeneID:
121294702
NCBI-ProteinID:
XP_041074642
LinkDB
All DBs
Position
19:complement(28113145..28148171)
Genome browser
AA seq
1306 aa
AA seq
DB search
MARRLRLHFASRRSNTDPLSETCGNGMENNLCMSSHSPSENTAQHVIQRTVTPGQLALPP
LSPKVGHLQRSSSLFIPQLNSSKKSTSLQISLQSRKLNGDLETCGSVVGGLGSSYGSTKK
EKSNSCGSSDIKSGIGSFTKEIVNGGDSCSIPTAEGFSCNSSSANGFGSCVSSTVSDSTR
TCQDTPCNIRTRDFGSCASPSSSTTSDAGYCSSSSIYFEPEILERTVGIERTPVKRKPKV
PLRRCSSLVIFPRSPCNTPPASPISPGPLPARSSCQTSRQFLLSAVEPTQEDDQIASKGS
IATAVNGLRLSKSSCPTVELRDIRPLQLNGPLPDRPQETDSGQDQPAARERSQRHSTVLL
HFAQQREVAIESELTTNGQRSSEHPVQEPEPGGCPQYHHIKLIRSTSACLPLQKHSDSQL
DSHRETERDGTQANNGRNSALQRSLSFEVPYQQISYHLSTSTQHSSKMGAPHVHIHLSHG
TEGRICGSLMKINSNCKSENDKAIPGRSTKTRDDFLGQVDVPLQQLPTENPNIERPYTFK
DFLLHPRSHKSRVKGHLRLKMTYLPKNNGSEEDNEEQSEDVEPGWEILDQQDTSGTCRQL
PVLPPGWEERQDNLGRTYYVNHETRTTQWHRPTAQDSQAEAQQQQTINHEAHHAFTNRRQ
ISEASSHERRESPDSWEIITEDETTLYNNHSQQSPPPPPHSPVEHSVCDAQSPPADELSQ
RIAITVQSHSSRRGSAQAVEEHPTHPVLLPTSSGLPAGWEEKQDSKGRIYYVNHNSRTTT
WTRPVIQTTIEAVQAMSSQGPVMYHPPQPSPETSPQHSLAQKSKYESGFLPAGWELRSAP
NGRPFFIDHNTKTTTWEDPRLKIPVQMRRRPSLDPTDLGPLPPGWEERVHTDGRIFYIDH
NTKATQWEDPRLQNAAITGPAVPYSRDYKQKYEYFSKKMKKPADIPNRFEMKLRRNAILE
DSYRKLLPVKRADFLKARLWIEFENEKGLDYGGVAREWFFLISKEMFNPYYGLFEYSATD
NYTLQINPNSGLCNEDHLSYFKFIGRVAGMAVYHGKLLDAFFIRPFYKMMLQKPITLQDM
ESVDNEYFNSLKWILENDPTELDLRFTVDEELFGQTHQHELKLGGSDIVVTNKNKKEYIH
LVIQWRFVNRVQQQMSAFKEGFYELVPLDLIKIFDENELELLMCGLGDVDVNDWRENTKY
KNGYCTTQPVIQWFWKTVLLMDAEKRIRLLQFVTGTSRVPMNGFAELYGSNGPQLFTIEQ
WGTPDKLPRAHTCFNRLDLPPYESFEDLREKLHIAIENAQGFDGVD
NT seq
3921 nt
NT seq
+upstream
nt +downstream
nt
atggcacggcggctgcgtttgcattttgcatcaaggagaagcaataccgaccctttgtct
gagacctgtggcaatggcatggaaaacaacttgtgcatgtcctctcacagtccttctgaa
aatactgcacaacatgttattcaaaggacggtaaccccagggcagctggctttgcctccg
ttgtcaccaaaggttgggcatttacagcgctcctcatcactatttataccacagcttaac
agcagcaaaaagagcacttctttgcagatttccctgcagtctcggaaattaaacggagat
cttgaaacatgtggcagtgttgttggtggtcttggtagtagttatggtagtacaaaaaag
gagaaaagtaatagctgtggatcaagtgacattaaaagtggaattggctcttttaccaag
gaaatagtaaatggtggcgattcttgcagcattcctacagctgaaggcttttcttgtaac
agcagcagtgccaatggttttgggtcatgtgtaagcagtaccgtgagtgacagcaccagg
acttgtcaggatactccttgtaacatcagaaccagggattttgggtcctgtgcaagtccg
agcagcagtaccaccagtgatgcgggttattgtagcagtagcagtatttattttgaacct
gaaatccttgagcgcacagtgggaatagaaagaacacctgtaaaacggaagccaaaggtg
ccactgaggcgctgctcttcgttagttatatttcctcggagcccctgtaacacgccacca
gcatctcctattagcccaggacctctgccagcacgcagttcctgccagacctcacgccag
tttttgctttctgctgttgagcctacgcaggaagacgatcaaattgcatcaaagggttct
atcgcaacagcggtcaatggcttaagattatccaaatccagctgcccaactgttgagctt
agggacataagaccactccagctgaatgggccgttaccagatagaccccaggaaactgac
agcggccaggatcagccagctgctcgggaacgatcacaaagacactcaactgttttgctg
cattttgctcagcaaagagaagttgcaattgagagtgagttgaccacaaatggccagcgc
agttctgagcatccggttcaggaaccagaaccaggtggttgtccgcagtatcatcatata
aaactgatccggagcacgtctgcctgtctgcccttgcagaaacattctgactctcaacta
gattctcacagagaaactgaaagggatggtacccaagcaaataatggtcggaacagtgct
ctgcagaggagcctttcatttgaagtgccataccaacagatttcataccatttatctaca
tctacgcaacacagttcaaagatgggggcccctcatgtgcacatacatttatcacatggc
accgaaggaaggatatgtggttccttaatgaaaataaatagcaactgcaaaagcgaaaat
gataaagccatccctggaagaagcacaaagaccagggatgattttctgggtcaggttgat
gttcctcttcagcagttaccaacagaaaatcctaacattgaaaggccatacacatttaag
gattttcttcttcatccaagaagtcataaatccagagtgaaaggccatcttagactgaag
atgacatacttgcctaaaaacaatgggtcggaggaagacaatgaagaacagtctgaagat
gtagagcctggctgggaaatattggaccaacaggacacctctgggacgtgccgccagctt
cctgtgcttcctccaggctgggaagaaagacaggataacctcggcaggacctactacgtc
aaccacgaaaccagaacgacacaatggcacaggcccacagctcaggacagtcaggcagaa
gcacaacaacagcaaactattaaccatgaagcacatcatgcctttactaatcgccggcag
atatctgaagcgtcaagtcatgagagaagagagtctcccgatagctgggaaataataacc
gaagatgagaccacactgtataataaccacagccagcagtctccaccaccaccacctcac
tctcccgttgaacacagtgtttgtgatgctcagagtcctcctgcagacgaactgagccaa
cgcatcgccatcacggttcagagccattcgagcagaaggggaagtgcacaggctgttgaa
gagcatcctacacatcctgtgttattgcccacttcgtcagggctgccagcaggttgggaa
gaaaagcaagatagtaaaggaagaatatactatgtaaatcataacagcagaacaactaca
tggacgcgcccggtcattcagactacaatagaagctgtgcaagccatgtcctcccagggt
cccgtcatgtaccaccctcctcaaccttctccagaaacttcacctcagcattctctggct
caaaaatccaaatatgaaagcggattcctccctgctggctgggaattgcgtagtgcaccc
aatggcagacccttctttattgatcacaatacaaaaaccaccacgtgggaggatccaaga
ttaaaaattccagttcagatgagaaggcgaccgtccttggatcctacagaccttgggccg
cttccacccggatgggaggagagagttcatacggatggcagaatattctacattgatcat
aacaccaaagctacacagtgggaagatccacggctacagaatgcagcaataactggacct
gctgtgccttattccagggattataaacagaagtacgagtacttcagcaaaaagatgaag
aaaccagctgatattcctaaccgttttgaaatgaagctgcggcgaaatgctatcctggaa
gactcctacaggaaactgctgcctgtcaagagagcagacttcctcaaagcacggctgtgg
attgaatttgagaatgaaaagggcctggattatggaggtgttgccagggaatggttcttc
cttatttccaaagaaatgttcaatccctattatggactgtttgaatattcagctactgat
aactacaccctacagattaaccccaattctggtttgtgcaacgaagatcacttatcttat
ttcaagtttatcggacgagttgctggaatggccgtttaccatgggaagctactggatgcg
ttcttcattcggcctttctataagatgatgctgcagaagccaataacgctgcaggatatg
gaatcggtggacaatgaatacttcaattcactgaagtggattctggaaaatgatcccact
gagctggacctcagattcacagtggatgaggagctctttgggcagactcatcagcatgag
ctaaaactgggtggatcagacattgtggtcacaaataagaacaagaaagagtatatccac
ctggttatccaatggagatttgtgaacagagtacagcagcagatgtcagccttcaaggag
ggattttatgaattggtacctctggatctcatcaaaatatttgatgaaaatgaattggag
ctgttaatgtgtggacttggagatgttgatgtgaatgactggagggaaaacactaaatac
aagaatggctactgtacaacacaacctgtcatacagtggttctggaagacggtgctacta
atggatgcagaaaagcgcatccgactgctgcagtttgtcactggcacctctcgagtgccc
atgaatggctttgcagagttgtatggatctaatggaccacagttatttaccattgaacag
tggggaacaccagacaaactacctagagctcacacttgcttcaaccgtttggatttgcct
ccatatgaatcatttgaggatttgcgagagaaacttcacatcgcaatagaaaatgcacag
ggatttgatggagtggattag
DBGET
integrated database retrieval system
